View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15725_low_17 (Length: 264)
Name: NF15725_low_17
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15725_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 33020898 - 33021143
Alignment:
| Q |
1 |
tactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtcttttatgctttcagttttaattttggattgttggagataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33020898 |
tactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtcttttatgctttcagttttaattttggattgttggagataa |
33020997 |
T |
|
| Q |
101 |
acattattgaaaaattctaatgaaaatggttggatttaattatgtgttgcatttttatgttccannnnnnnnnngggttagaagcatataagtgctcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33020998 |
acattattgaaaaattctaatgaaaatggttggatttaattatgtgttgcatttttatgttcca-tttttttttgggttagaagcatataagtgctcatg |
33021096 |
T |
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| Q |
201 |
ttccatatgtgtgagtacttgattcacccgttcatgatattcatatt |
247 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33021097 |
ttccatatgtgtgagtacttgattcacacgttcatgatattcatatt |
33021143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27025125 - 27025370
Alignment:
| Q |
1 |
tactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtcttttatgctttcagttttaattttggattgttggagataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025125 |
tactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtcttttatgctttcagttttaattttggattgttggagataa |
27025224 |
T |
|
| Q |
101 |
acattattgaaaaattctaatgaaaatggttggatttaattatgtgttgcatttttatgttccannnnnnnnnngggttagaagcatataagtgctcatg |
200 |
Q |
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| T |
27025225 |
acattattgaaaaattctaatgaaaatggttgaatttaattatgtgttgcatttttatgttcca-tttttttttgggttagaagcatataagtgctcatg |
27025323 |
T |
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| Q |
201 |
ttccatatgtgtgagtacttgattcacccgttcatgatattcatatt |
247 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27025324 |
ttccatatgtgtgagtacttgattcacacgttcatgatattcatatt |
27025370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 10114882 - 10114635
Alignment:
| Q |
1 |
tactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtcttttatgctttcagttttaattttggattgttggagataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10114882 |
tactacccaaaagtgcatgaaatacatgtaggaatgaagtcaatttttattttccttgtcttttatgctttcagttttaattttggattgttggagataa |
10114783 |
T |
|
| Q |
101 |
acattattgaaaaattctaatgaaaatggttggatttaattatgtgttgcatttttatgttcca-nnnnnnnnnngggttagaagcatataagtgctcat |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10114782 |
acattattgaaaaattctaatgaaaatggttgaatttaattatgtgttgcatttttatgttccatttttttttttgggttagaagcatataagtgctcat |
10114683 |
T |
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| Q |
200 |
gttccatatgtgtgagtacttgattcacccgttcatgatattcatatt |
247 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10114682 |
gttccatatgtgtgagtacttgattcacacgttcatgatattcatatt |
10114635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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