View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15725_low_18 (Length: 262)

Name: NF15725_low_18
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15725_low_18
NF15725_low_18
[»] chr3 (19 HSPs)
chr3 (7-156)||(17720-17872)
chr3 (189-247)||(32951338-32951396)
chr3 (189-249)||(39435235-39435295)
chr3 (189-247)||(4238822-4238880)
chr3 (189-247)||(17052865-17052923)
chr3 (189-247)||(27848953-27849011)
chr3 (189-247)||(28690517-28690575)
chr3 (195-247)||(10435141-10435193)
chr3 (189-247)||(3547622-3547680)
chr3 (193-247)||(7460022-7460076)
chr3 (189-247)||(8559207-8559265)
chr3 (189-247)||(18659053-18659111)
chr3 (189-247)||(21906997-21907055)
chr3 (189-247)||(29728300-29728358)
chr3 (155-193)||(36864589-36864627)
chr3 (189-247)||(37832901-37832959)
chr3 (189-247)||(43137852-43137910)
chr3 (189-247)||(54840330-54840388)
chr3 (207-247)||(45167318-45167358)
[»] chr4 (20 HSPs)
chr4 (9-150)||(39831879-39832017)
chr4 (77-150)||(20422995-20423068)
chr4 (98-148)||(46144774-46144824)
chr4 (189-247)||(19525916-19525974)
chr4 (189-247)||(3901341-3901399)
chr4 (189-247)||(4264135-4264193)
chr4 (189-247)||(25644360-25644418)
chr4 (189-247)||(46212552-46212610)
chr4 (189-247)||(46803632-46803690)
chr4 (197-249)||(14958017-14958069)
chr4 (189-249)||(39195681-39195741)
chr4 (189-247)||(3442546-3442604)
chr4 (189-247)||(5735272-5735330)
chr4 (189-247)||(6923142-6923200)
chr4 (189-247)||(28166275-28166333)
chr4 (189-247)||(45198542-45198600)
chr4 (189-247)||(47579288-47579346)
chr4 (190-247)||(28151993-28152050)
chr4 (190-247)||(31486288-31486345)
chr4 (9-53)||(20423062-20423106)
[»] chr5 (18 HSPs)
chr5 (77-150)||(10470117-10470190)
chr5 (77-150)||(43511089-43511162)
chr5 (189-247)||(970139-970197)
chr5 (189-247)||(23988580-23988638)
chr5 (189-247)||(35448199-35448257)
chr5 (189-247)||(39405765-39405823)
chr5 (193-247)||(43067234-43067288)
chr5 (188-247)||(5364420-5364479)
chr5 (193-247)||(4300034-4300088)
chr5 (189-247)||(16048084-16048142)
chr5 (189-247)||(22613911-22613969)
chr5 (189-247)||(25946299-25946357)
chr5 (189-247)||(29627269-29627327)
chr5 (189-247)||(32334842-32334900)
chr5 (189-247)||(38697964-38698022)
chr5 (189-247)||(40512882-40512940)
chr5 (189-247)||(42148308-42148366)
chr5 (9-53)||(10470184-10470228)
[»] chr7 (16 HSPs)
chr7 (79-148)||(45432883-45432952)
chr7 (189-247)||(2400286-2400344)
chr7 (189-247)||(10464317-10464375)
chr7 (189-247)||(34478213-34478271)
chr7 (189-247)||(37231766-37231824)
chr7 (189-247)||(35500949-35501007)
chr7 (189-247)||(36819697-36819755)
chr7 (189-247)||(19072770-19072828)
chr7 (189-247)||(28185610-28185668)
chr7 (189-247)||(42086840-42086898)
chr7 (189-247)||(47080981-47081039)
chr7 (189-247)||(47713704-47713762)
chr7 (189-247)||(47713781-47713839)
chr7 (118-192)||(32498370-32498441)
chr7 (9-53)||(45432843-45432887)
chr7 (181-249)||(47841262-47841330)
[»] chr2 (16 HSPs)
chr2 (77-150)||(34238656-34238729)
chr2 (70-150)||(41768855-41768934)
chr2 (101-150)||(41770454-41770503)
chr2 (189-247)||(40598129-40598187)
chr2 (189-247)||(14372078-14372136)
chr2 (189-247)||(23671377-23671435)
chr2 (191-247)||(14707736-14707792)
chr2 (9-53)||(34238618-34238662)
chr2 (210-249)||(5030471-5030510)
chr2 (32-109)||(41769693-41769767)
chr2 (180-247)||(42038516-42038582)
chr2 (189-247)||(18718240-18718298)
chr2 (189-247)||(34826913-34826971)
chr2 (189-247)||(40425451-40425509)
chr2 (189-247)||(41172959-41173017)
chr2 (207-247)||(44330403-44330443)
[»] chr8 (12 HSPs)
chr8 (77-150)||(42294210-42294283)
chr8 (189-247)||(40013652-40013710)
chr8 (189-247)||(3293304-3293362)
chr8 (189-247)||(11854525-11854583)
chr8 (189-247)||(29790943-29791001)
chr8 (189-247)||(38845201-38845259)
chr8 (189-247)||(18809277-18809335)
chr8 (189-247)||(30289925-30289983)
chr8 (189-247)||(38739658-38739716)
chr8 (193-247)||(43066132-43066186)
chr8 (189-247)||(45081813-45081871)
chr8 (179-247)||(2805678-2805745)
[»] chr1 (21 HSPs)
chr1 (191-247)||(16266165-16266221)
chr1 (189-247)||(3898773-3898831)
chr1 (189-247)||(16265034-16265092)
chr1 (189-247)||(24982352-24982410)
chr1 (189-247)||(25531779-25531837)
chr1 (189-247)||(26441638-26441696)
chr1 (189-247)||(43680070-43680128)
chr1 (189-247)||(48219844-48219902)
chr1 (189-247)||(48265013-48265071)
chr1 (189-247)||(50876365-50876423)
chr1 (89-150)||(44769510-44769571)
chr1 (189-247)||(16751655-16751713)
chr1 (155-193)||(19534084-19534122)
chr1 (189-247)||(30529252-30529310)
chr1 (189-247)||(32988551-32988609)
chr1 (189-247)||(39354466-39354524)
chr1 (193-247)||(47222219-47222273)
chr1 (189-247)||(50539261-50539319)
chr1 (189-247)||(52378990-52379048)
chr1 (186-247)||(49805454-49805515)
chr1 (191-247)||(14075738-14075794)
[»] scaffold0051 (1 HSPs)
scaffold0051 (180-247)||(41419-41486)
[»] chr6 (6 HSPs)
chr6 (189-247)||(643633-643691)
chr6 (181-247)||(11114558-11114624)
chr6 (189-247)||(33121543-33121601)
chr6 (189-249)||(16434728-16434788)
chr6 (207-247)||(22020295-22020335)
chr6 (207-247)||(24150760-24150800)
[»] scaffold0092 (1 HSPs)
scaffold0092 (189-247)||(44310-44368)
[»] scaffold0018 (1 HSPs)
scaffold0018 (189-249)||(145759-145819)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 17720 - 17872
Alignment:
Q  7 tcgagagagaagaaaggtgaaatac---agaggaggaggaaggagaaggggtaacggggagaaaccaataaaaagaagggaaaataatcatgtacaatta 103  Q
    ||||||||||||||||||||||  |   |||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||  |||||    
T  17720 tcgagagagaagaaaggtgaaaaccgatagagaaggaggaaggagaaggggtaacggggagaagcgaataaaaaaaagggaaaataatcatgtgtaatta 17819  T
Q  104 attttatatgaagcttttaatctgatccgtacaatttgatctaatggatacta 156  Q
    |||||||||  ||||||||||||||||||||||||||||||||| || |||||    
T  17820 attttatatcgagcttttaatctgatccgtacaatttgatctaaaggctacta 17872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 32951396 - 32951338
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||    
T  32951396 actccctccgtcccatattaaatgatctagttgacttcgacacacataccaatgcatat 32951338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 39435295 - 39435235
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatattt 249  Q
    |||||||||||||| ||||| |||||||||| || | |||||||||||||||| |||||||    
T  39435295 actccctccgtcccttattagatgacctagttgattctgacacatataccaatacatattt 39435235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 4238880 - 4238822
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||| ||||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  4238880 actccctccgttccatattaaatgatctagttgacttcgacacacgtaccaatgcatat 4238822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 17052865 - 17052923
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||| |||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  17052865 actccctccgtctcatattaaatgatctagttgacttcgacacacgtaccaatgcatat 17052923  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 27848953 - 27849011
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  |||| |||||||||| |||||||||| | ||||||||||||||    
T  27848953 actccctccgtccctcattagatgacctagttgactttgacatacataccaatgcatat 27849011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 28690517 - 28690575
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||| ||||||| |||||||||| ||||  |||||| ||||||||||||||    
T  28690517 actccctccgtcacatattagatgacctagttgactccgacacacataccaatgcatat 28690575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 10435141 - 10435193
Alignment:
Q  195 tccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  10435141 tccgtcccatattaaatgatctagttgacttcgacacacgtaccaatgcatat 10435193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 3547680 - 3547622
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||||||||||| |||||||| | ||||  ||||||  |||||||||||||    
T  3547680 actccctccgtcccatattagatgacctaattgactccgacacacgtaccaatgcatat 3547622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 7460076 - 7460022
Alignment:
Q  193 cctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  7460076 cctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 7460022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 8559265 - 8559207
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||| ||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  8559265 actccatccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 8559207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 18659053 - 18659111
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||| ||||| |||| ||||||| ||||||||||||||    
T  18659053 actccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatat 18659111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 21906997 - 21907055
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||| ||||| |||| ||||||| ||||||||||||||    
T  21906997 actccctccgtccctcaataaatgatctagttgactctgacacacataccaatgcatat 21907055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 29728358 - 29728300
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| |||||||  |||||||||||||    
T  29728358 actccctccgtccctcaataaatgacctagttgactctgacacaagtaccaatgcatat 29728300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 36864589 - 36864627
Alignment:
Q  155 tattatttaatcttctcaccctctcataataatcactcc 193  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  36864589 tattatttactcctctcaccctctcataataatcactcc 36864627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 37832901 - 37832959
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | |||||||| |||| |||| ||||||| ||||||||||||||    
T  37832901 actccctccgtccctaaataaatgacatagttgactctgacacacataccaatgcatat 37832959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 43137852 - 43137910
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||| ||||| |||| ||||||| ||||||||||||||    
T  43137852 actccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatat 43137910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 54840388 - 54840330
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||| ||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  54840388 actccctccatccctaaataaatgacctagttgactctgacacacataccaatgcatat 54840330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 45167318 - 45167358
Alignment:
Q  207 taaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||| |||| ||||||| ||||||||||||||    
T  45167318 taaatgacctagttgactctgacacacataccaatgcatat 45167358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 39831879 - 39832017
Alignment:
Q  9 gagagagaagaaaggtgaaatacagaggaggaggaaggagaaggggtaacggggagaaaccaataaaaagaagggaaaataatcatgtacaattaatttt 108  Q
    ||||||||||||| ||||||   |||| |||||||||||||| |  ||||||||||||    |||||||||||||||||||||||||| |||||||||||    
T  39831879 gagagagaagaaatgtgaaaactagagaaggaggaaggagaaagactaacggggagaag---ataaaaagaagggaaaataatcatgtgcaattaatttt 39831975  T
Q  109 atatgaagcttttaatctgatccgtacaatttgatctaatgg 150  Q
    |||||||| |||||||||||||| ||||||||||||||||||    
T  39831976 atatgaagtttttaatctgatccatacaatttgatctaatgg 39832017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 20423068 - 20422995
Alignment:
Q  77 agaagggaaaataatcatgtacaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatgg 150  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  20423068 agaagggaaaataatcatgtgcaatcaattttatatgaagcttttaatctgatccgttcaatttgatttaatgg 20422995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 46144824 - 46144774
Alignment:
Q  98 caattaattttatatgaagcttttaatctgatccgtacaatttgatctaat 148  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46144824 caattaattttatatgaagcttttaatctgatccatacaatttgatctaat 46144774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 19525974 - 19525916
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||  |||||||||||||    
T  19525974 actccctccgtcctatattaaatgacctagttgacttcgacacacgtaccaatgcatat 19525916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 3901399 - 3901341
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  3901399 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 3901341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 4264135 - 4264193
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  4264135 actccctccgtccctcaataaatgacctagttgactctgacacacataccaatgcatat 4264193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 25644360 - 25644418
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||| |||||||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  25644360 actccctctgtcccatattaaatgatctagttgacttcgacacacgtaccaatgcatat 25644418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 46212610 - 46212552
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  46212610 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 46212552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 46803632 - 46803690
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  46803632 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 46803690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 14958017 - 14958069
Alignment:
Q  197 cgtcccatattaaatgacctagtagactttgacacatataccaatgcatattt 249  Q
    |||| ||||||| |||||||||| |||| ||||||| ||||||||||||||||    
T  14958017 cgtctcatattagatgacctagttgactctgacacacataccaatgcatattt 14958069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 39195741 - 39195681
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatattt 249  Q
    ||||||| |||||| ||||| |||||||||| |||| ||||||| ||| ||||||||||||    
T  39195741 actcccttcgtcccttattagatgacctagttgactctgacacacatatcaatgcatattt 39195681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 3442604 - 3442546
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | |||||||| |||| |||| ||||||| ||||||||||||||    
T  3442604 actccctccgtccctaaataaatgacatagttgactctgacacacataccaatgcatat 3442546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 5735272 - 5735330
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||| ||||| |||| ||||||| ||||||||||||||    
T  5735272 actccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatat 5735330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 6923200 - 6923142
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||  ||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  6923200 actccctccgtcttatattaaatgatctagttgacttcgacacacgtaccaatgcatat 6923142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 28166275 - 28166333
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||| ||||| |||| ||||||| ||||||||||||||    
T  28166275 actccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatat 28166333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 45198600 - 45198542
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||| ||||| |||| ||||||| ||||||||||||||    
T  45198600 actccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatat 45198542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 47579288 - 47579346
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| | ||||| ||||||||||||||    
T  47579288 actccctccgtccctaaataaatgacctagttgactcttacacacataccaatgcatat 47579346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 28151993 - 28152050
Alignment:
Q  190 ctccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||   | ||||||||||||| |||| ||||||| ||||||||||||||    
T  28151993 ctccctccgtccttaaataaatgacctagttgactctgacacacataccaatgcatat 28152050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 31486288 - 31486345
Alignment:
Q  190 ctccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||| |||||||||||| |||||||||| |||| | ||||| |||| |||||||||    
T  31486288 ctcccttcgtcccatattagatgacctagttgactctaacacacatactaatgcatat 31486345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 20423106 - 20423062
Alignment:
Q  9 gagagagaagaaaggtgaaatacagaggaggaggaaggagaaggg 53  Q
    ||||||||||||||||||||  | ||| |||||||||||||||||    
T  20423106 gagagagaagaaaggtgaaaaccggagaaggaggaaggagaaggg 20423062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 10470190 - 10470117
Alignment:
Q  77 agaagggaaaataatcatgtacaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatgg 150  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  10470190 agaagggaaaataatcatgtgcaatcaattttatatgaagcttttaatctgatccgttcaatttaatctaatgg 10470117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 43511162 - 43511089
Alignment:
Q  77 agaagggaaaataatcatgtacaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatgg 150  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  43511162 agaagggaaaataatcatgtgcaatcaattttatatgaagcttttaatcagatccgttcaatttgatctaatgg 43511089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 970139 - 970197
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||| |||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  970139 actccctccgtctcatattaaatgatctagttgacttcgacacacgtaccaatgcatat 970197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 23988580 - 23988638
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  23988580 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 23988638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 35448257 - 35448199
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  35448257 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 35448199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 39405765 - 39405823
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||||||| ||||| ||||| || |||  |||||||||||||    
T  39405765 actccctccgtcccatattaaatgatctagttgacttcgagacacgtaccaatgcatat 39405823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 43067234 - 43067288
Alignment:
Q  193 cctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  43067234 cctccgtcccatattaaatgatctagttgacttcgacacacgtaccaatgcatat 43067288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 5364420 - 5364479
Alignment:
Q  188 cactccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||||||  | ||| ||||||||| |||| ||||||| ||||||||||||||    
T  5364420 cactccctccgtccctaaataagtgacctagttgactctgacacacataccaatgcatat 5364479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 4300088 - 4300034
Alignment:
Q  193 cctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||| |||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  4300088 cctccgtctcatattaaatgatctagttgacttcgacacacgtaccaatgcatat 4300034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 16048084 - 16048142
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||| ||||||||||||| |||||| ||||| ||||| ||||||  |||||||||||||    
T  16048084 actctctccgtcccatatcaaatgatctagttgacttcgacacacgtaccaatgcatat 16048142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 22613969 - 22613911
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||| |||||||| |||||||| ||||| ||||| ||||||  |||||||||||||    
T  22613969 actcccttcgtcccatgttaaatgatctagttgacttagacacacgtaccaatgcatat 22613911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 25946357 - 25946299
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||| |||| |||| |||| || |||||||| ||||| ||||    
T  25946357 actccctccgtcccatattaagtgacatagttgactctgtcacatatatcaatgtatat 25946299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 29627269 - 29627327
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||| ||||||||||    
T  29627269 actccctccgtccctaaataaatgacctagttgactctgacacacatatcaatgcatat 29627327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 32334900 - 32334842
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||| |||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  32334900 actccctctgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 32334842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 38697964 - 38698022
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||| | |||| ||||||| ||||||||||||||    
T  38697964 actccctccgtccctaaataaatgacctaattgactctgacacacataccaatgcatat 38698022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 40512940 - 40512882
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||| ||||||||| |||| ||||||| ||||||||||||||    
T  40512940 actccctccgtccctaaataagtgacctagttgactctgacacacataccaatgcatat 40512882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 42148308 - 42148366
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||| ||||| |||| ||||||| ||||||||||||||    
T  42148308 actccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatat 42148366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 10470228 - 10470184
Alignment:
Q  9 gagagagaagaaaggtgaaatacagaggaggaggaaggagaaggg 53  Q
    |||||||||||||||| |||  ||||| |||||||||||||||||    
T  10470228 gagagagaagaaaggtaaaaaccagagaaggaggaaggagaaggg 10470184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 45432883 - 45432952
Alignment:
Q  79 aagggaaaataatcatgtacaattaattttatatgaagcttttaatctgatccgtacaatttgatctaat 148  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||    
T  45432883 aagggaaaataatcatgtgcaatcaattttatatgaagcttttaatctgatccattcaatttgatctaat 45432952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 2400286 - 2400344
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||||||||||||||||||    
T  2400286 actccctccgtccctaaataaatgacctagttgactctgacacatataccaatgcatat 2400344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 10464375 - 10464317
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||||||||||||||||  |||| ||||||||||||  |||||||||||||    
T  10464375 actccctccgtcccatattaaatgatatagttgactttgacacacgtaccaatgcatat 10464317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 34478271 - 34478213
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||  |||||||||||||    
T  34478271 actccctccgtcccatattaaataacctagttgacttcgacacacgtaccaatgcatat 34478213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 37231824 - 37231766
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  37231824 actccctccgtcccatattaaatgatctagttgacttcgacacacgtaccaatgcatat 37231766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 35501007 - 35500949
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||||||| |||||  |||| ||||||  |||||||||||||    
T  35501007 actccctccgtcccatattaaatgatctagttaacttcgacacacgtaccaatgcatat 35500949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 36819697 - 36819755
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  36819697 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 36819755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 19072770 - 19072828
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| || | ||||||| ||||||||||||||    
T  19072770 actccctccgtccctaaataaatgacctagttgattctgacacacataccaatgcatat 19072828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 28185668 - 28185610
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| |||||||| |||||    
T  28185668 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatacatat 28185610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 42086898 - 42086840
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||| ||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  42086898 actccctccatccctaaataaatgacctagttgactctgacacacataccaatgcatat 42086840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 47080981 - 47081039
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | | ||||||||||| |||| ||||||| ||||||||||||||    
T  47080981 actccctccgtccctaaatgaatgacctagttgactctgacacacataccaatgcatat 47081039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 47713762 - 47713704
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||| ||||||||| |||| ||||||| ||||||||||||||    
T  47713762 actccctccgtccctaaataagtgacctagttgactctgacacacataccaatgcatat 47713704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 47713839 - 47713781
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||| ||||||||| |||| ||||||| ||||||||||||||    
T  47713839 actccctccgtccctaaataagtgacctagttgactctgacacacataccaatgcatat 47713781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 32498370 - 32498441
Alignment:
Q  118 ttttaatctgatccgtacaatttgatctaatggatactattatttaatcttctcaccctctcataataatcactc 192  Q
    ||||||||||  ||||||| |||||||||||||   |||||||| | |  ||||||||||||||||||| |||||    
T  32498370 ttttaatctgtaccgtacactttgatctaatgg---ctattattcagtactctcaccctctcataataaccactc 32498441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 45432843 - 45432887
Alignment:
Q  9 gagagagaagaaaggtgaaatacagaggaggaggaaggagaaggg 53  Q
    ||||||||||||||||||||  ||||| ||||||||||| |||||    
T  45432843 gagagagaagaaaggtgaaaaccagagaaggaggaaggataaggg 45432887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 47841330 - 47841262
Alignment:
Q  181 taataatcactccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatattt 249  Q
    ||||||| |||||||  |||| |||||| |||| |||   |||| ||||||||||||||||||||||||    
T  47841330 taataattactccctttgtcctatattagatgatctaactgactctgacacatataccaatgcatattt 47841262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 34238656 - 34238729
Alignment:
Q  77 agaagggaaaataatcatgtacaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatgg 150  Q
    |||||||||||||||||||| | || |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  34238656 agaagggaaaataatcatgtgctatcaattttatatgaagcttttaatttgatccgttcaatttgatctaatgg 34238729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 41768934 - 41768855
Alignment:
Q  70 aataaaaagaagggaaaataatcatgtacaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatgg 150  Q
    ||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  41768934 aataaaaagaagg-aaaataataatgtgcaattaattttatacgaagcttttaatccgatccatacaatttgatctaatgg 41768855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 41770454 - 41770503
Alignment:
Q  101 ttaattttatatgaagcttttaatctgatccgtacaatttgatctaatgg 150  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  41770454 ttaattttatatgaagcttttaatctgatccatacaatttgatctgatgg 41770503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 40598129 - 40598187
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  40598129 actccctccgtcccatattaaatgatctagttgacttcgacacacgtaccaatgcatat 40598187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 14372078 - 14372136
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  14372078 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 14372136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 23671377 - 23671435
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  23671377 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 23671435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 14707792 - 14707736
Alignment:
Q  191 tccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  14707792 tccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 14707736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 34238618 - 34238662
Alignment:
Q  9 gagagagaagaaaggtgaaatacagaggaggaggaaggagaaggg 53  Q
    ||||||||||||||||||||  ||||| |||||||||||||||||    
T  34238618 gagagagaagaaaggtgaaaaccagagaaggaggaaggagaaggg 34238662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 5030510 - 5030471
Alignment:
Q  210 atgacctagtagactttgacacatataccaatgcatattt 249  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  5030510 atgacctagttgactttgacacacataccaatgcatattt 5030471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 41769693 - 41769767
Alignment:
Q  32 agaggaggaggaaggagaaggggtaacggggagaaaccaataaaaagaagggaaaataatcatgtacaattaatttta 109  Q
    |||||| || ||| ||||| | |||||||||||||    ||||||||||||||||||||| |||| ||||||||||||    
T  41769693 agaggaagaagaaagagaaagagtaacggggagaag---ataaaaagaagggaaaataattatgtgcaattaatttta 41769767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 42038516 - 42038582
Alignment:
Q  180 ataataatcactccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||| ||||||||||||||  | ||| ||||||||| |||| ||||||| ||||||||||||||    
T  42038516 ataataat-actccctccgtccctaaataagtgacctagttgactctgacacacataccaatgcatat 42038582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 18718240 - 18718298
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||| ||||||||||    
T  18718240 actccctccgtccctaaataaatgacctagttgactctgacacacatatcaatgcatat 18718298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 34826913 - 34826971
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| |||| |||||||||    
T  34826913 actccctccgtccctaaataaatgacctagttgactctgacacacatactaatgcatat 34826971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 40425509 - 40425451
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| || | ||||||| ||||||||||||||    
T  40425509 actccctccgtccctaaataaatgacctagttgattctgacacacataccaatgcatat 40425451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 41173017 - 41172959
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||| | |||| ||||||| ||||||||||||||    
T  41173017 actccctccgtccctaaataaatgacctacttgactctgacacacataccaatgcatat 41172959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 44330403 - 44330443
Alignment:
Q  207 taaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||| |||| ||||||| ||||||||||||||    
T  44330403 taaatgacctagttgactctgacacacataccaatgcatat 44330443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 42294210 - 42294283
Alignment:
Q  77 agaagggaaaataatcatgtacaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatgg 150  Q
    |||||| ||||||||||||| |||| |||||||||| |||||||||||||||| ||  ||||||||||||||||    
T  42294210 agaaggaaaaataatcatgtgcaatcaattttatataaagcttttaatctgattcgctcaatttgatctaatgg 42294283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 40013652 - 40013710
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||||| || ||||||||||||| |||| ||||||| ||||||||||||||    
T  40013652 actccctccgtcccttaataaatgacctagttgactctgacacacataccaatgcatat 40013710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 3293362 - 3293304
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||| ||||| |||| ||||||||||||||||||||||    
T  3293362 actccctccgtccctaaataaatgatctagttgactctgacacatataccaatgcatat 3293304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 11854525 - 11854583
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||||||||||||| || ||||| ||||| ||||||  |||||||||||||    
T  11854525 actccctccgtcccatattaaacgatctagttgacttcgacacacgtaccaatgcatat 11854583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 29790943 - 29791001
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  29790943 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 29791001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 38845201 - 38845259
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  38845201 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 38845259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 18809277 - 18809335
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||| ||||||||||||||| ||||| || || ||||||  |||||||||||||    
T  18809277 actccctccatcccatattaaatgatctagttgagttcgacacacgtaccaatgcatat 18809335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 30289925 - 30289983
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||| | ||||||||||||||    
T  30289925 actccctccgtccctaaataaatgacctagttgactctgacatacataccaatgcatat 30289983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 38739658 - 38739716
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||||   | ||||||||||||| |||| ||||||| ||||||||||||||    
T  38739658 actccctccgtccttaaataaatgacctagttgactctgacacacataccaatgcatat 38739716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 43066132 - 43066186
Alignment:
Q  193 cctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  43066132 cctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 43066186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 45081813 - 45081871
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||| ||||||| |||| ||||||| ||||||||||||||    
T  45081813 actccctccgtccctaaataaataacctagttgactctgacacacataccaatgcatat 45081871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 2805745 - 2805678
Alignment:
Q  179 cataataatcactccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||| ||||||||||||||  | ||||||||| ||| |||| ||||| | ||||||||||||||    
T  2805745 cataataat-actccctccgtccctaaataaatgacccagttgactctgacatacataccaatgcatat 2805678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 16266165 - 16266221
Alignment:
Q  191 tccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  16266165 tccctccgtcccatattaaatgatctagttgacttcgacacacgtaccaatgcatat 16266221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 3898831 - 3898773
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||||||| ||||| ||||| |||| |  |||||||||||||    
T  3898831 actccctccgtcccatattaaatgatctagttgacttcgacagacgtaccaatgcatat 3898773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 16265034 - 16265092
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||| |||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  16265034 actccctccgtctcatattaaatgatctagttgacttcgacacacgtaccaatgcatat 16265092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 24982352 - 24982410
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||| |||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  24982352 actccctccgtctcatattaaatgatctagttgacttcgacacacgtaccaatgcatat 24982410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 25531779 - 25531837
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  25531779 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 25531837  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 26441638 - 26441696
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||| ||||||||||||| ||||| ||||| ||||||  |||||||||||||    
T  26441638 actccctccgttccatattaaatgatctagttgacttcgacacacgtaccaatgcatat 26441696  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 43680070 - 43680128
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||   |||||||||||||    
T  43680070 actccctccgtcccatattaaatgatctagttgacttcgacacgcgtaccaatgcatat 43680128  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 48219902 - 48219844
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  48219902 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 48219844  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 48265071 - 48265013
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  48265071 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 48265013  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 50876365 - 50876423
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| | ||||||||||||||||||||    
T  50876365 actccctccgtccctaaataaatgacctagttgactctaacacatataccaatgcatat 50876423  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 44769510 - 44769571
Alignment:
Q  89 aatcatgtacaattaattttatatgaagcttttaatctgatccgtacaatttgatctaatgg 150  Q
    ||||||||  ||||||||| ||||| |||||| ||||||| ||| |||||||||||||||||    
T  44769510 aatcatgtgtaattaatttaatatggagctttaaatctgacccgcacaatttgatctaatgg 44769571  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 16751713 - 16751655
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||| |||||||| |||||||||| ||||  ||||||  |||||||||||||    
T  16751713 actccctccgttccatattagatgacctagttgactccgacacacgtaccaatgcatat 16751655  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 19534122 - 19534084
Alignment:
Q  155 tattatttaatcttctcaccctctcataataatcactcc 193  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  19534122 tattatttactcctctcaccctctcataataatcactcc 19534084  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 30529310 - 30529252
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| |||||||  |||||||||||||    
T  30529310 actccctccgtccctcaataaatgacctagttgactctgacacaagtaccaatgcatat 30529252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 32988609 - 32988551
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||| |  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  32988609 actccctccgtctctaaataaatgacctagttgactctgacacacataccaatgcatat 32988551  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 39354524 - 39354466
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||| ||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  39354524 actccctacgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 39354466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 47222219 - 47222273
Alignment:
Q  193 cctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||| ||||||||||||||||||||| ||||  ||||||  |||||||||||||    
T  47222219 cctccatcccatattaaatgacctagttgactccgacacacgtaccaatgcatat 47222273  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 50539261 - 50539319
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||| ||||| |||| ||||||| ||||||||||||||    
T  50539261 actccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatat 50539319  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 52378990 - 52379048
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||| ||||| |||| ||||||| ||||||||||||||    
T  52378990 actccctccgtccctaaataaatgatctagttgactctgacacacataccaatgcatat 52379048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 49805515 - 49805454
Alignment:
Q  186 atcactccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||||||||  | ||||||| ||||| |||| ||||| | ||||||||||||||    
T  49805515 atcactccctccgtccctaaataaatgatctagttgactctgacaaacataccaatgcatat 49805454  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 14075738 - 14075794
Alignment:
Q  191 tccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||||||||| |||| | ||| ||||  |||||| ||||||||||||||    
T  14075738 tccctccgtcccatattagatgatcgagttgactccgacacacataccaatgcatat 14075794  T

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Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 41486 - 41419
Alignment:
Q  180 ataataatcactccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||| ||| ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  41486 ataagaattactccctccgtccctcaataaatgacctagttgactctgacacacataccaatgcatat 41419  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 643691 - 643633
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||| ||||||||||||||    
T  643691 actccctccgtccctaaataaatgacctagttgactctgacacacataccaatgcatat 643633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 11114558 - 11114624
Alignment:
Q  181 taataatcactccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||| ||||||||||||||  | ||||||||||||| || | ||||||| ||||||||||||||    
T  11114558 taataattactccctccgtccctcaataaatgacctagttgattctgacacacataccaatgcatat 11114624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 33121543 - 33121601
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    |||||||||||||| || ||||||||||||| ||||| ||||||  |||||||||||||    
T  33121543 actccctccgtcccttaataaatgacctagttgacttcgacacacgtaccaatgcatat 33121601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 16434788 - 16434728
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatattt 249  Q
    |||||||||||||||||||| |||| ||||| ||||  |||||  ||||||||||||||||    
T  16434788 actccctccgtcccatattagatgaactagttgactcagacactcataccaatgcatattt 16434728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 22020295 - 22020335
Alignment:
Q  207 taaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||| |||| ||||||| ||||||||||||||    
T  22020295 taaatgacctagttgactctgacacacataccaatgcatat 22020335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 24150760 - 24150800
Alignment:
Q  207 taaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||| |||| ||||||| ||||||||||||||    
T  24150760 taaatgacctagttgactctgacacacataccaatgcatat 24150800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 44368 - 44310
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatat 247  Q
    ||||||||||||||  | ||||||||||||| |||| ||||||  ||||||||||||||    
T  44368 actccctccgtccctaaataaatgacctagttgactctgacacgcataccaatgcatat 44310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 145819 - 145759
Alignment:
Q  189 actccctccgtcccatattaaatgacctagtagactttgacacatataccaatgcatattt 249  Q
    |||||||||||||||| ||| |||| ||||| | ||  |||||| ||||||||||||||||    
T  145819 actccctccgtcccatgttagatgatctagttggctcagacacacataccaatgcatattt 145759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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