View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15725_low_2 (Length: 687)

Name: NF15725_low_2
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15725_low_2
NF15725_low_2
[»] chr1 (17 HSPs)
chr1 (1-561)||(17408473-17409033)
chr1 (599-669)||(17409071-17409141)
chr1 (256-347)||(9828081-9828172)
chr1 (256-347)||(25934653-25934744)
chr1 (290-350)||(1486643-1486703)
chr1 (295-347)||(43112999-43113051)
chr1 (256-347)||(16164246-16164337)
chr1 (451-529)||(29856331-29856409)
chr1 (290-347)||(6427535-6427592)
chr1 (262-347)||(41597412-41597497)
chr1 (256-347)||(25361923-25362010)
chr1 (256-304)||(34371750-34371798)
chr1 (256-347)||(48147968-48148059)
chr1 (298-347)||(7918156-7918205)
chr1 (277-310)||(12918992-12919025)
chr1 (186-235)||(29856773-29856822)
chr1 (278-347)||(40258875-40258944)
[»] chr6 (16 HSPs)
chr6 (256-347)||(10294144-10294235)
chr6 (256-347)||(18367873-18367964)
chr6 (278-347)||(24645529-24645598)
chr6 (290-347)||(34595194-34595251)
chr6 (256-347)||(8365450-8365541)
chr6 (256-306)||(16488562-16488612)
chr6 (290-347)||(12696389-12696446)
chr6 (264-345)||(23130405-23130486)
chr6 (289-347)||(16833367-16833425)
chr6 (277-347)||(33001231-33001301)
chr6 (290-347)||(8776910-8776967)
chr6 (258-347)||(10339056-10339145)
chr6 (290-347)||(17327592-17327649)
chr6 (268-313)||(25038036-25038081)
chr6 (256-304)||(9195728-9195776)
chr6 (255-315)||(11352397-11352457)
[»] chr3 (8 HSPs)
chr3 (256-347)||(17005550-17005641)
chr3 (267-347)||(28812563-28812643)
chr3 (256-347)||(8039766-8039857)
chr3 (256-307)||(11665981-11666032)
chr3 (256-347)||(41961581-41961672)
chr3 (287-344)||(16192667-16192724)
chr3 (256-325)||(14832136-14832205)
chr3 (290-347)||(20503525-20503582)
[»] chr4 (14 HSPs)
chr4 (256-347)||(30982809-30982900)
chr4 (279-347)||(47264046-47264114)
chr4 (256-347)||(22234821-22234912)
chr4 (290-347)||(3947703-3947760)
chr4 (267-347)||(24613632-24613712)
chr4 (292-348)||(28000671-28000727)
chr4 (256-308)||(46083961-46084013)
chr4 (256-347)||(5414103-5414194)
chr4 (290-347)||(2361917-2361974)
chr4 (287-347)||(36635387-36635447)
chr4 (256-347)||(19482705-19482796)
chr4 (290-347)||(23292928-23292985)
chr4 (290-347)||(35161096-35161153)
chr4 (258-310)||(44132612-44132664)
[»] scaffold0036 (2 HSPs)
scaffold0036 (256-348)||(9677-9769)
scaffold0036 (299-347)||(35691-35739)
[»] chr2 (12 HSPs)
chr2 (256-347)||(34784913-34785004)
chr2 (256-347)||(35056905-35056996)
chr2 (256-347)||(44860357-44860448)
chr2 (256-310)||(28524463-28524517)
chr2 (256-347)||(11223795-11223885)
chr2 (256-347)||(26769548-26769639)
chr2 (277-347)||(20242669-20242739)
chr2 (278-347)||(18840955-18841024)
chr2 (256-347)||(36096306-36096397)
chr2 (273-347)||(21782746-21782820)
chr2 (290-347)||(15972933-15972990)
chr2 (290-347)||(27286223-27286280)
[»] chr7 (14 HSPs)
chr7 (256-341)||(6630849-6630934)
chr7 (256-345)||(4008497-4008586)
chr7 (256-345)||(4013889-4013978)
chr7 (256-299)||(15902859-15902902)
chr7 (264-336)||(11072341-11072413)
chr7 (256-304)||(26329356-26329404)
chr7 (287-347)||(43027406-43027466)
chr7 (256-347)||(24339679-24339770)
chr7 (256-347)||(25822692-25822783)
chr7 (278-347)||(598256-598325)
chr7 (290-347)||(5409773-5409830)
chr7 (291-347)||(29763131-29763187)
chr7 (171-235)||(39732896-39732960)
chr7 (171-235)||(39839998-39840062)
[»] chr8 (12 HSPs)
chr8 (256-344)||(12570443-12570530)
chr8 (290-347)||(8343387-8343444)
chr8 (256-344)||(12570669-12570756)
chr8 (256-347)||(15816060-15816151)
chr8 (256-347)||(26902106-26902197)
chr8 (256-347)||(29447481-29447572)
chr8 (290-347)||(16641911-16641968)
chr8 (290-347)||(36450696-36450753)
chr8 (267-347)||(29447041-29447121)
chr8 (256-347)||(11927017-11927108)
chr8 (256-347)||(11944702-11944793)
chr8 (255-345)||(4122182-4122272)
[»] scaffold0003 (2 HSPs)
scaffold0003 (256-347)||(241631-241722)
scaffold0003 (299-347)||(236916-236964)
[»] chr5 (10 HSPs)
chr5 (256-347)||(6401535-6401626)
chr5 (258-345)||(30183588-30183675)
chr5 (256-347)||(32766874-32766965)
chr5 (256-306)||(21814298-21814348)
chr5 (290-344)||(26312829-26312883)
chr5 (290-347)||(30098397-30098454)
chr5 (256-346)||(18592110-18592200)
chr5 (281-347)||(27932286-27932352)
chr5 (290-347)||(21576687-21576744)
chr5 (306-347)||(41558590-41558631)
[»] scaffold0122 (1 HSPs)
scaffold0122 (299-336)||(7585-7622)
[»] scaffold0008 (1 HSPs)
scaffold0008 (256-347)||(263303-263394)
[»] scaffold0623 (1 HSPs)
scaffold0623 (256-310)||(5964-6018)
[»] scaffold0306 (1 HSPs)
scaffold0306 (290-347)||(13466-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (290-347)||(21804-21861)
[»] scaffold0154 (1 HSPs)
scaffold0154 (259-347)||(13453-13541)
[»] scaffold0049 (1 HSPs)
scaffold0049 (299-347)||(57003-57051)


Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 17408473 - 17409033
Alignment:
Q  1 atggtctaaaaaggccatgtatgggacctttagagcttaagaacacttccgggaagacaccggttttagatatcggagcacttgagaaagttagatctgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17408473 atggtctaaaaaggccatgtatgggacctttagagcttaagaacacttccgggaagacaccggttttagatatcggagcacttgagaaagttagatctgg 17408572  T
Q  101 tgaaattaaagttgttcctggaataaagagattttcacaagggaaagttgaacttgttgatggaaaagttcttgatattgattctgttgttcttgctact 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17408573 tgaaattaaagttgtttctggaataaagagattttcacaagggaaagttgaacttgttgatggaaaagttcttgatattgattctgttgttcttgctact 17408672  T
Q  201 ggctatagaagcaatgtaccatcttggcttaaggttagtttgtttagtccttctttgtaattatatgtgtcggtgttgtgttggtatcagacacgacacg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17408673 ggctatagaagcaatgtaccatcttggcttaaggttagtttgtttagtccttctttgtaattatatatgtcggtgttgtgttggtatcagacacgacacg 17408772  T
Q  301 tgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcatggtacttaatagttcactttgtttaagttgattatttaatttgtctatgttat 400  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17408773 tgtccgacaccaagatacacctaatctgaagagtgtctgtgcttcatagtacttagtagttcactttgtttaagttgattatttaatttgtctatgttat 17408872  T
Q  401 gtatttaacaggagaatgaannnnnnnccaaagatggaatgccaaaagatccatttccaaatggatggaaaggaaatgctggtctatatgctgttggatt 500  Q
    ||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17408873 gtattgaacaggagaatgaatttttttccaaagatggaatgccaaaagatccatttccaaatggatggaaaggaaatgctggtctatatgctgttggatt 17408972  T
Q  501 tacaaggagaggactctctggtgcttcattggatgcaattagtgtgtctcaagacattgct 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17408973 tacaaggagaggactctctggtgcttcattggatgcaattagtgtgtctcaagacattgct 17409033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 599 - 669
Target Start/End: Original strand, 17409071 - 17409141
Alignment:
Q  599 cagtggctgcacgtcatagaagatgcatatcacacttctaagtgtctgttagaagtggcgtttgatgaagc 669  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17409071 cagtggctgcacgtcataggagatgcatatcacacttctaagtgtctgtttgaagtggcgtttgatgaagc 17409141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 9828081 - 9828172
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||| ||||||||||||| ||||  || |||||||||||||||||| |||||| ||| ||  |||||| || ||||||| |||||||||    
T  9828081 tgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcat 9828172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 25934653 - 25934744
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||| | |||| ||| || |||||||||||||||||||||  |||||| ||| |||  | ||||||| |||||||||    
T  25934653 tgtaattatatgtgtcggtatcgtgtcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcat 25934744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 1486703 - 1486643
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcatggt 350  Q
    ||||||||||||||| |||||| ||| || ||||||| || ||||||||||||||||||||    
T  1486703 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcatggt 1486643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 43112999 - 43113051
Alignment:
Q  295 gacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||| |||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  43112999 gacatgtgtctgacaccgggacacacctaatctgaagagagtctgtgcttcat 43113051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 16164337 - 16164246
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||  ||| |||||||| |  ||| | ||||||||| |||||||||| || ||||||| ||||||||| |||| |||||    
T  16164337 tgtaattatatgtgtcattgtcgtgttggtgttggacgcaacacgtgtccgacaccaggacacgcctaatccgaagagtgtatgtgtttcat 16164246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 451 - 529
Target Start/End: Complemental strand, 29856409 - 29856331
Alignment:
Q  451 ccatttccaaatggatggaaaggaaatgctggtctatatgctgttggatttacaaggagaggactctctggtgcttcat 529  Q
    ||||| || ||||| |||||||||| || ||| || ||||||||||| ||||||| |||||| ||||||||| ||||||    
T  29856409 ccattccctaatggttggaaaggaactgttggactttatgctgttgggtttacaaagagagggctctctggttcttcat 29856331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 6427535 - 6427592
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||| |||||| ||| || |||||||||| ||||||| |||||||||    
T  6427535 gacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcat 6427592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 347
Target Start/End: Complemental strand, 41597497 - 41597412
Alignment:
Q  262 tatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||| ||||||||||  || || |||||||||||||||||||||  |||||| | | |||  | |||||||||||||||||    
T  41597497 tatatgtgttggtgttgtgtccgtgtcggacacgacacgtgtctgacacggggatacgctttatccaaggagtgtctgtgcttcat 41597412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 25361923 - 25362010
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||||| |||| |||| ||| || |||||||||  |||| |||||| ||| |||||||||| |||||||||| |||||||||    
T  25361923 tgtaattatatgtgtcagtgtcgtgtcggtgtcggacacgaca--tgtccgacacc-gga-acacctaatccgaagagtgtccgtgcttcat 25362010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 34371750 - 34371798
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtc 304  Q
    ||||||||||||||||||||| |||||||| || || ||||||||||||    
T  34371750 tgtaattatatgtgtcggtgtcgtgttggtgtcggatacgacacgtgtc 34371798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 48148059 - 48147968
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||| ||||||||| |||||| ||||  |||||||   ||| ||||||| ||| || |||||||| |||||||  ||||||||||    
T  48148059 tgtaattatatatgtcggtgtcgtgttgatatcgaacacgacgtatgtatgacaccgggacacgcctaatctaaagagtggttgtgcttcat 48147968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 7918205 - 7918156
Alignment:
Q  298 acgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||| ||||||||||||| |||||||||| || ||||||| |||||||||    
T  7918205 acgtttctgacaccaggacacacctaatccgaggagtgtccgtgcttcat 7918156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 12918992 - 12919025
Alignment:
Q  277 tgtgttggtatcagacacgacacgtgtctgacac 310  Q
    |||||||||||| |||||||||||||||||||||    
T  12918992 tgtgttggtatcggacacgacacgtgtctgacac 12919025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 29856822 - 29856773
Alignment:
Q  186 gttgttcttgctactggctatagaagcaatgtaccatcttggcttaaggt 235  Q
    ||||||||||||||||| ||| | |||||||| || ||||||||||||||    
T  29856822 gttgttcttgctactggatatcgtagcaatgtcccttcttggcttaaggt 29856773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 40258944 - 40258875
Alignment:
Q  278 gtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||| ||| ||||||||||||| |||| |||||||||| || ||||||| || |||||||  ||||||||    
T  40258944 gtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcat 40258875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 10294144 - 10294235
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||||| |||||||| || ||||||||| ||||| || || |||| ||| ||||||||| |||||||||||||||||    
T  10294144 tgtaattatatgtgtcggtgtcgtgttggtgtcggacacgacatgtgtccgaaactaggacacagctaatctgaggagtgtctgtgcttcat 10294235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 18367873 - 18367964
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||  ||| || ||| |||  | ||||||| |||||||||    
T  18367873 tgtaattatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgtccgtgcttcat 18367964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 24645529 - 24645598
Alignment:
Q  278 gtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||| ||| |||||||||||||||||| ||||||| || ||  |||||| ||||||||||||||||||||    
T  24645529 gtgtcggtgtcagacacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcat 24645598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 34595194 - 34595251
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||||||||||| ||| |||||||||| || ||||||| |||||||||    
T  34595194 gacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcat 34595251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 8365541 - 8365450
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||| | |||||||||| |||| |||||| ||||||||||||||| |||||  ||| || ||||||| || |||| || |||||||||    
T  8365541 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcat 8365450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 16488612 - 16488562
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctg 306  Q
    ||||||||||||||||||||| |||| ||| || |||||||||||||||||    
T  16488612 tgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctg 16488562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 12696389 - 12696446
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||||||||||| ||| |||||| |||  | |||||||||||||||||    
T  12696389 gacacgacacgtgtctgacaccgggacacaccttatccaaggagtgtctgtgcttcat 12696446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 23130486 - 23130405
Alignment:
Q  264 tatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttc 345  Q
    |||||||| ||||  ||||||| ||||||||||||||||||||| | | ||| |  |||||||||| |||||| ||||||||    
T  23130486 tatgtgtcagtgtcatgttggtgtcagacacgacacgtgtctgatatcgggacatgcctaatctgaggagtgtatgtgcttc 23130405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 347
Target Start/End: Original strand, 16833367 - 16833425
Alignment:
Q  289 agacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||| ||| |||||||||| ||||| |||| || |||||||||| ||||||    
T  16833367 agacacgacacgcgtccgacaccaggacacaccgaatccgaggagtgtctgtacttcat 16833425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 33001301 - 33001231
Alignment:
Q  277 tgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||| ||| || ||||||||||||||||||||||   |||| |||||||  |||||||| ||||||||||    
T  33001301 tgtgtcggtgtcggacacgacacgtgtctgacaccgaaatacgcctaatccaaagagtgtttgtgcttcat 33001231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 8776967 - 8776910
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||| ||||||  || |||||||||| || ||||||| |||||||||    
T  8776967 gacacgacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcat 8776910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 347
Target Start/End: Complemental strand, 10339145 - 10339056
Alignment:
Q  258 taattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||| |||  |||| ||| || |||||||||| |||| |||||  ||| || ||||||| || ||||||| |||||||||    
T  10339145 taattatatgtgtcagtgccgtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcat 10339056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 17327649 - 17327592
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||||||||||  ||| || ||||||| || ||||||| |||||||||    
T  17327649 gacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcat 17327592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 25038081 - 25038036
Alignment:
Q  268 tgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccag 313  Q
    ||||||| |||||||||| || ||||||||||||||| ||||||||    
T  25038081 tgtcggtattgtgttggtgtccgacacgacacgtgtccgacaccag 25038036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 9195776 - 9195728
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtc 304  Q
    ||||||||||||||||||||| |||| ||| || ||||||||| |||||    
T  9195776 tgtaattatatgtgtcggtgtcgtgtaggtgtctgacacgacatgtgtc 9195728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 11352397 - 11352457
Alignment:
Q  255 ttgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccagga 315  Q
    |||||||||||||| ||  ||| |||| |||||||||||| ||||||||| |||| |||||    
T  11352397 ttgtaattatatgtatcaatgtcgtgtcggtatcagacacaacacgtgtccgacatcagga 11352457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 17005641 - 17005550
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||| ||||||||||||||||||| |||||||  |||||||||||||||||||| ||  |||||| || |||||| ||||||||||    
T  17005641 tgtaattataagtgtcggtgttgtgttggtgtcagacataacacgtgtctgacaccaggacacctctaatccgaggagtgtttgtgcttcat 17005550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 28812563 - 28812643
Alignment:
Q  267 gtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||| |||||||| |||||||||| || |||| |||| ||||| || ||||||| || |||||||||||| ||||    
T  28812563 gtgtcggtgtcgtgttggtgtcagacacgatacatgtccgacagcaggacacgcctaatccgaggagtgtctgtgcctcat 28812643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 8039857 - 8039766
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||||| |||| ||| || |||| || || |||| |||||| ||| || | ||||| ||||||| ||||||||||||    
T  8039857 tgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatccgaagagtatctgtgcttcat 8039766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 11665981 - 11666032
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctga 307  Q
    ||||||||||||||||||||| |||||| | | |||||||||||||||||||    
T  11665981 tgtaattatatgtgtcggtgtcgtgttgatgttagacacgacacgtgtctga 11666032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 41961672 - 41961581
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||| | |||||||||| |||| |||||| ||||||||||||||| |||||  ||| || ||||||| ||  |||||| |||||||||    
T  41961672 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcat 41961581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 16192724 - 16192667
Alignment:
Q  287 tcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgctt 344  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||| |||||| |||||||    
T  16192724 tcagacacgacacgtgtctgacaccgggacatacctaatatgaggagtgtttgtgctt 16192667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 14832136 - 14832205
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaat 325  Q
    |||||||| | ||||| |||| |||| |||||| ||||||||||||||| |||||| ||| || ||||||    
T  14832136 tgtaattacaagtgtcagtgtcgtgtcggtatcggacacgacacgtgtccgacaccgggacacgcctaat 14832205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 20503525 - 20503582
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||| ||||||||||| ||| || ||||||| || ||||||| |||||||||    
T  20503525 gacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 20503582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 30982900 - 30982809
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||| |||||||||| |||| ||| |||||||||||||||||| |||||| ||| || |||||||  ||||||||| |||||||||    
T  30982900 tgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcat 30982809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 47264046 - 47264114
Alignment:
Q  279 tgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||| ||||| ||||||| ||||||||||||||| || ||||||| |||||| |||||||||||||    
T  47264046 tgttggtgtcagatacgacacatgtctgacaccaggacacgcctaatccgaagagcgtctgtgcttcat 47264114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 22234912 - 22234821
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||| ||||||||||||| |||| ||| || ||||||||||||||| |||||||||| ||| |||||| ||  |||||  |||||||||    
T  22234912 tgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcat 22234821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 3947760 - 3947703
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||| |||||||||| |||||||||| || ||||||| |||||||||    
T  3947760 gacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcat 3947703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 24613712 - 24613632
Alignment:
Q  267 gtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||  ||| ||| ||||||||||||||||||||||||||||| ||  ||||||  | ||||||| |||||||||    
T  24613712 gtgtcggtgtcatgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcat 24613632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 28000727 - 28000671
Alignment:
Q  292 cacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcatg 348  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||| ||||||||||    
T  28000727 cacgacacgtgtctgacaccgagacacacctaatctgatgagtgtccgtgcttcatg 28000671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 46084013 - 46083961
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgac 308  Q
    ||||||||||||||||||||| ||||  ||||| |||||||||||||||||||    
T  46084013 tgtaattatatgtgtcggtgtcgtgtcagtatcggacacgacacgtgtctgac 46083961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 5414194 - 5414103
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||| ||||||| ||||  || || |||||||||||||||||||||  ||| |||||| |||  | ||||||| |||||||||    
T  5414194 tgtaattatatgtatcggtgtcgtgtcagtgtcggacacgacacgtgtctgacacagggacacaccttatccaaggagtgtccgtgcttcat 5414103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 2361974 - 2361917
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||| |||||||||||||  || ||||||||||||| ||||||| |||||||||    
T  2361974 gacacgactcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgcttcat 2361917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 36635387 - 36635447
Alignment:
Q  287 tcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||| ||| |||||| ||| || ||||||| |||||||||| |||||||||    
T  36635387 tcagacacgacacgcgtcagacaccgggacacgcctaatccgaagagtgtccgtgcttcat 36635447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 19482705 - 19482796
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||| | |||| ||||| |||| |||||  ||||||||||||||| |||||  ||| |||||||||| || ||||||  |||||||||    
T  19482705 tgtaattacaagtgttggtgtcgtgtcggtattggacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcat 19482796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 23292985 - 23292928
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||| |||||| ||| || ||||||| || ||||||| |||||||||    
T  23292985 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 23292928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 35161096 - 35161153
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||| |||||| | | |||||||||| ||| |||||| |||||||||    
T  35161096 gacacgacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcat 35161153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 44132664 - 44132612
Alignment:
Q  258 taattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacac 310  Q
    ||||||||||||||||||| |||||||| ||  |||| ||| |||||||||||    
T  44132664 taattatatgtgtcggtgtcgtgttggtgtcgaacacaacatgtgtctgacac 44132612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 256 - 348
Target Start/End: Complemental strand, 9769 - 9677
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcatg 348  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| | ||| ||   ||||| || ||||||| ||||||||||    
T  9769 tgtaattatatgtgtcggtgtcgtgttggtgtcagacacgacacttgtctgacatcgggacacgtataatccgaggagtgtccgtgcttcatg 9677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 35691 - 35739
Alignment:
Q  299 cgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||   | ||||||| |||||||||||||||||||||||    
T  35691 cgtgtctgacaccgaaacacacctactctgaagagtgtctgtgcttcat 35739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 34785004 - 34784913
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||||| |||| |||||| |||||||||| ||||||||||  ||| || ||| ||  || |||||||||||||||||    
T  34785004 tgtaattatatgtgtcggtgtcgtgtcggtatcggacacgacacctgtctgacacggggacacgccttattcgaggagtgtctgtgcttcat 34784913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 35056905 - 35056996
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||||| |||| ||| || ||||||||||||||| |||||    | || |||||||||| ||||||| |||||||||    
T  35056905 tgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcat 35056996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 44860357 - 44860448
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||||| |||||||| |  ||||||||| ||||| |||| | ||| |||||||||  || ||||||| |||||||||    
T  44860357 tgtaattatatgtgtcggtgtcgtgttggtgttggacacgacatgtgtccgacatcgggacacacctaattcgaggagtgtccgtgcttcat 44860448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 28524463 - 28524517
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacac 310  Q
    ||||||||||||||||| |||||||||||| || ||||| |||||||||||||||    
T  28524463 tgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgtctgacac 28524517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 11223885 - 11223795
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||| | ||||||||||  ||| ||| || |||||||||| ||||||||||| ||| || |||||||||| ||||||| |||||||||    
T  11223885 tgtaattacaagtgtcggtgtcatgtaggtgtcggacacgacac-tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcat 11223795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 26769548 - 26769639
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||| | ||||||||||  ||| |||||| ||||||||||||||| |||||  ||| || ||||||| || ||||||| |||||||||    
T  26769548 tgtaattacaagtgtcggtgtcatgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcat 26769639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 20242739 - 20242669
Alignment:
Q  277 tgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||| ||| || ||||| ||||||||||||||| |||| || ||| ||| ||||||||||||||||||||    
T  20242739 tgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcat 20242669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 18841024 - 18840955
Alignment:
Q  278 gtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||| ||| ||||||||||||| |||| |||||| ||| |||||||||| || ||||||| |||||||||    
T  18841024 gtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcat 18840955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 36096397 - 36096306
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||| ||||||||| |||| | | || |||||||||||||||||||||  ||| || ||| | |  ||||||||| |||||||||    
T  36096397 tgtaattatatttgtcggtgtcgtgtcgatgtcggacacgacacgtgtctgacacggggacacgccttaaccaaagagtgtccgtgcttcat 36096306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 21782820 - 21782746
Alignment:
Q  273 gtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||| |||| |||||||||||||  ||||| ||| ||  ||||||||  ||||||| |||||||||    
T  21782820 gtgttgtgttggtgtcaggcacgacacgtgtccaacaccgggacacgtctaatctgtggagtgtccgtgcttcat 21782746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 15972933 - 15972990
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||| ||| || ||| |||||||||| ||||| |||| |||||||||    
T  15972933 gacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcat 15972990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 27286280 - 27286223
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||| |||| |||||| ||| | | ||||||| |||||||||||||||||||    
T  27286280 gacacgacacatgtccgacaccgggacatatctaatctaaagagtgtctgtgcttcat 27286223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 6630934 - 6630849
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtg 341  Q
    ||||||||||||||||| ||| |||||||| || ||||| ||||||| | ||||||| || ||||||||||||| |||||| ||||    
T  6630934 tgtaattatatgtgtcgatgtcgtgttggtgtcggacacaacacgtgcccgacaccaagacacacctaatctgaggagtgtgtgtg 6630849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 4008586 - 4008497
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttc 345  Q
    ||||||| ||||||||||| |||| | | | || |||||| |||||||| ||| |||||||||||||||||||| ||| || ||||||||    
T  4008586 tgtaattgtatgtgtcggtattgtatcgatgtccgacacggcacgtgtccgacgccaggatacacctaatctgaggagagtatgtgcttc 4008497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 4013978 - 4013889
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttc 345  Q
    ||||||| ||||||||||| |||| | | | || |||||| |||||||| ||| |||||||||||||||||||| ||| || ||||||||    
T  4013978 tgtaattgtatgtgtcggtattgtatcgatgtccgacacggcacgtgtccgacgccaggatacacctaatctgaggagagtatgtgcttc 4013889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 15902859 - 15902902
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacac 299  Q
    |||||||||||||||||||||||||| |||||| ||||||||||    
T  15902859 tgtaattatatgtgtcggtgttgtgtcggtatcggacacgacac 15902902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 11072341 - 11072413
Alignment:
Q  264 tatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgt 336  Q
    ||||||||||||| |||| |||||| ||||||| || || |  ||||| | ||||||||||||||||||||||    
T  11072341 tatgtgtcggtgtcgtgtcggtatctgacacgatacatgaccaacaccggaatacacctaatctgaagagtgt 11072413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 26329404 - 26329356
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtc 304  Q
    |||||||||||||||||| || |||| ||| ||||||||||||||||||    
T  26329404 tgtaattatatgtgtcggcgtcgtgtcggtgtcagacacgacacgtgtc 26329356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 43027466 - 43027406
Alignment:
Q  287 tcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||||||| |||||| ||| || ||||||| || ||||||| |||||||||    
T  43027466 tcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcat 43027406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 24339679 - 24339770
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||| | |||||||||| |||| ||| || |||||||||||| || |||||| ||| || ||||||| || ||||| | |||||||||    
T  24339679 tgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcat 24339770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 25822692 - 25822783
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||| | |||||||||| || | |||||| |||||||||||||||||||| | ||| |  |||||||| | ||||||| ||| |||||    
T  25822692 tgtaattacaagtgtcggtgtcgtatcggtatcggacacgacacgtgtctgacatcgggacatgcctaatctaaggagtgtccgtgtttcat 25822783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 598256 - 598325
Alignment:
Q  278 gtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||| ||| |||||||||||||||||| |||||| ||| || ||||||| ||  |||||| |||||||||    
T  598256 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcat 598325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 5409830 - 5409773
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||| |||||| ||| || ||||||| || ||||||| |||||||||    
T  5409830 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 5409773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 29763187 - 29763131
Alignment:
Q  291 acacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||| |||| ||||| || ||||||| || ||||||| |||||||||    
T  29763187 acacgacacgtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcat 29763131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 39732960 - 39732896
Alignment:
Q  171 cttgatattgattctgttgttcttgctactggctatagaagcaatgtaccatcttggcttaaggt 235  Q
    |||||||||||| | ||||||||||||||||| ||  | |||||||| || ||||||||| ||||    
T  39732960 cttgatattgatgcagttgttcttgctactggttaccgcagcaatgtcccttcttggcttcaggt 39732896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 39839998 - 39840062
Alignment:
Q  171 cttgatattgattctgttgttcttgctactggctatagaagcaatgtaccatcttggcttaaggt 235  Q
    |||||||||||| | ||||||||||||||||| ||  | |||||||| || ||||||||| ||||    
T  39839998 cttgatattgatgcagttgttcttgctactggttaccgcagcaatgtcccttcttggcttcaggt 39840062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 12570530 - 12570443
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgctt 344  Q
    ||||||||||||||||| ||| || | ||| |||||||| ||||||||| |||||||||| || ||||||||||||| |||| ||||||    
T  12570530 tgtaattatatgtgtcgatgt-gtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctgaagattgtccgtgctt 12570443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 8343387 - 8343444
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||| |||||| ||| || ||||||| ||||||||||||||||||||    
T  8343387 gacacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcat 8343444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 12570756 - 12570669
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgctt 344  Q
    ||||||||||| ||| ||||| || | ||| |||||||| ||||||||| |||||||||| || ||||||||||||| |||| ||||||    
T  12570756 tgtaattatatatgttggtgt-gtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctgaagattgtccgtgctt 12570669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 15816151 - 15816060
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||| |||||||||| |||||||| || |||||||||||  || |||||| ||| || ||||||| ||  |||||| |||||||||    
T  15816151 tgtaattataagtgtcggtgtcgtgttggtgtcggacacgacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttcat 15816060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 26902197 - 26902106
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||||| || |  || || ||||||||||||||||| |||  ||| || ||| |||||| ||||||| |||||||||    
T  26902197 tgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtgtccgtgcttcat 26902106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 29447481 - 29447572
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||| ||||| |||| ||| |||||||||||| ||||| |||||| ||| |   |||||| || ||||||| |||||||||    
T  29447481 tgtaattatatgtgttggtgtcgtgtcggtgtcagacacgacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttcat 29447572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 16641968 - 16641911
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||| |||||| ||||| ||| |||||||||| || |||||||||||||||||    
T  16641968 gacacgacatgtgtctaacaccgggacacacctaatccgaggagtgtctgtgcttcat 16641911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 36450753 - 36450696
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||| |||||| |||||||||| || ||||||| || |||||||||||||||||    
T  36450753 gacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcat 36450696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 29447121 - 29447041
Alignment:
Q  267 gtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||  ||| ||| || ||||||||| |||||||||||||||| || |||||||  | ||||||| |||||||||    
T  29447121 gtgtcggtgtcatgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcat 29447041  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 11927108 - 11927017
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||||| |||||||| ||| |||||||| || ||  ||| |  || || ||||||| || ||||||| |||||||||    
T  11927108 tgtaattatatgtgtcggtgtcgtgttggtgtcatacacgacatgtatccaacatcgagacacgcctaatccgatgagtgtccgtgcttcat 11927017  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 11944702 - 11944793
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||||| |||||| | ||| |||||||| || || ||||||  || || ||||||| || ||||||  |||||||||    
T  11944702 tgtaattatatgtgtcggtgtcgtgttgatgtcatacacgacatgtatccgacaccgagacacgcctaatccgatgagtgttcgtgcttcat 11944793  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 255 - 345
Target Start/End: Complemental strand, 4122272 - 4122182
Alignment:
Q  255 ttgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttc 345  Q
    |||||||||||||||||||||||||||   | ||| |||||||||||||  |||||| | | ||  ||||||  ||||||||| |||||||    
T  4122272 ttgtaattatatgtgtcggtgttgtgtcaatgtcaaacacgacacgtgttggacaccggaacacgtctaatccaaagagtgtccgtgcttc 4122182  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 241631 - 241722
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||  |||||||||| |||||||| || ||||||||||||||| |||||| ||| || ||||||| ||  |||||| |||||||||    
T  241631 tgtaattatgagtgtcggtgtcgtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcat 241722  T

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Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 236964 - 236916
Alignment:
Q  299 cgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  236964 cgtgtctgacaccgggacacacctaatctgaggagtgtctgtgcttcat 236916  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 6401535 - 6401626
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||||||||| ||||  || || |||||||||||||||||||||  |||||| ||| |||  | ||||||| |||||||||    
T  6401535 tgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcat 6401626  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 258 - 345
Target Start/End: Original strand, 30183588 - 30183675
Alignment:
Q  258 taattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttc 345  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||| |||||  ||| || ||||||  ||  ||||||||||||||    
T  30183588 taattacaagtgtcggtgtcgtgttggtatcagacacgacacgtgtccgacactgggacacgcctaattcgagaagtgtctgtgcttc 30183675  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 32766965 - 32766874
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||||  |||| |||| ||| ||  | |||||||||||| |||||||||||||  ||||||||| ||||||| |||||||||    
T  32766965 tgtaattatatgtgtttgtgtcgtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcat 32766874  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 21814298 - 21814348
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctg 306  Q
    ||||||||||||||||||||| |||| ||| || |||||||||||||||||    
T  21814298 tgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctg 21814348  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 26312829 - 26312883
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgctt 344  Q
    ||||||| |||||||||||||||||| |||||||||| || |||||| |||||||    
T  26312829 gacacgatacgtgtctgacaccaggacacacctaatccgaggagtgtatgtgctt 26312883  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 30098397 - 30098454
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||||| |||||||||| |||||||||| || || |||| |||||||||    
T  30098397 gacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgcttcat 30098454  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 18592110 - 18592200
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttca 346  Q
    |||||||||||||| |||||| |||| ||| || ||||| |||||||||||||| | ||| ||  |||||  || ||||||| ||||||||    
T  18592110 tgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacacgtgtctgacatcgggacacggctaattcgatgagtgtccgtgcttca 18592200  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 27932286 - 27932352
Alignment:
Q  281 ttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||| || ||||||||||||||| |||||||||| || ||||||  || |||||| ||||||||||    
T  27932286 ttggtgtcggacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcat 27932352  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 21576744 - 21576687
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||||||||||||||  ||| || ||||||| || ||||||| |||||||||    
T  21576744 gacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcat 21576687  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 41558631 - 41558590
Alignment:
Q  306 gacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||| |||||| ||||||||||| |||||||||    
T  41558631 gacaccaggatacgcctaatttgaagagtgtcagtgcttcat 41558590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 7585 - 7622
Alignment:
Q  299 cgtgtctgacaccaggatacacctaatctgaagagtgt 336  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7585 cgtgtccgacaccaggatacacctaatctgaagagtgt 7622  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 263394 - 263303
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    |||||||||| ||||| |||| |||| ||| |||||||||||||||||  || |||| || || ||||||| || ||||||| ||| |||||    
T  263394 tgtaattataagtgtcagtgtcgtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgaggagtgtccgtggttcat 263303  T

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Target: scaffold0623 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 6018 - 5964
Alignment:
Q  256 tgtaattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacac 310  Q
    ||||||||||||||||||||| || | ||| ||  ||||||||||||||||||||    
T  6018 tgtaattatatgtgtcggtgtcgtatcggtgtcgaacacgacacgtgtctgacac 5964  T

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Target: scaffold0306 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 13466 - 13523
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||| ||||||||| |||| ||||||||||  | ||||||| |||||||||    
T  13466 gacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 13523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 21861 - 21804
Alignment:
Q  290 gacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||| ||||||||| |||| ||||||||||  | ||||||| |||||||||    
T  21861 gacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 21804  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 259 - 347
Target Start/End: Original strand, 13453 - 13541
Alignment:
Q  259 aattatatgtgtcggtgttgtgttggtatcagacacgacacgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||| ||||||||| || |||| ||| || |||||||||||| |  |||| | |||||||||||||| || ||||||| || ||||||    
T  13453 aattacatgtgtcggggtcgtgtcggtgtcggacacgacacgtatacgacatcgggatacacctaatccgaggagtgtccgtacttcat 13541  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 57003 - 57051
Alignment:
Q  299 cgtgtctgacaccaggatacacctaatctgaagagtgtctgtgcttcat 347  Q
    ||||||||||||| | | ||||||||||||| |||||| ||||||||||    
T  57003 cgtgtctgacaccggaaaacacctaatctgaggagtgtttgtgcttcat 57051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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