View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15725_low_4 (Length: 413)

Name: NF15725_low_4
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15725_low_4
NF15725_low_4
[»] chr6 (12 HSPs)
chr6 (17-404)||(8915401-8915788)
chr6 (102-364)||(20985804-20986066)
chr6 (111-235)||(5376980-5377104)
chr6 (111-235)||(5378835-5378959)
chr6 (129-235)||(1088676-1088782)
chr6 (111-235)||(19645305-19645429)
chr6 (96-157)||(31528957-31529018)
chr6 (128-200)||(9415205-9415277)
chr6 (138-193)||(24544763-24544818)
chr6 (176-235)||(15149108-15149167)
chr6 (140-221)||(30488552-30488632)
chr6 (96-157)||(2161790-2161851)
[»] chr2 (5 HSPs)
chr2 (244-363)||(18776738-18776857)
chr2 (111-235)||(29758222-29758346)
chr2 (140-219)||(18612074-18612153)
chr2 (157-235)||(8759115-8759193)
chr2 (96-141)||(31155522-31155567)
[»] chr4 (11 HSPs)
chr4 (225-363)||(27737757-27737895)
chr4 (111-235)||(18656210-18656334)
chr4 (111-235)||(7040463-7040587)
chr4 (111-235)||(23564680-23564804)
chr4 (140-222)||(56074680-56074762)
chr4 (152-221)||(52545149-52545217)
chr4 (96-186)||(52518911-52519001)
chr4 (101-186)||(52520753-52520838)
chr4 (151-235)||(54296530-54296614)
chr4 (129-182)||(23566392-23566445)
chr4 (140-193)||(18395677-18395730)
[»] chr3 (4 HSPs)
chr3 (111-235)||(17402787-17402911)
chr3 (111-235)||(1140103-1140227)
chr3 (129-235)||(6789722-6789828)
chr3 (291-363)||(36472287-36472359)
[»] chr7 (11 HSPs)
chr7 (128-235)||(28014295-28014402)
chr7 (111-218)||(20046500-20046607)
chr7 (225-363)||(31822306-31822444)
chr7 (111-235)||(44963265-44963389)
chr7 (225-316)||(7165586-7165677)
chr7 (128-235)||(25471793-25471900)
chr7 (96-186)||(28126404-28126494)
chr7 (101-186)||(28124582-28124667)
chr7 (101-186)||(4895735-4895820)
chr7 (128-216)||(8405628-8405716)
chr7 (140-193)||(29598006-29598059)
[»] scaffold0311 (4 HSPs)
scaffold0311 (225-363)||(13387-13525)
scaffold0311 (270-363)||(13065-13158)
scaffold0311 (270-363)||(13226-13319)
scaffold0311 (291-357)||(15017-15083)
[»] scaffold0189 (1 HSPs)
scaffold0189 (111-220)||(19063-19171)
[»] chr8 (13 HSPs)
chr8 (102-235)||(5567528-5567661)
chr8 (111-235)||(30224332-30224456)
chr8 (140-221)||(31032038-31032118)
chr8 (112-235)||(25249108-25249231)
chr8 (140-235)||(3379149-3379243)
chr8 (140-220)||(19473649-19473728)
chr8 (140-220)||(19544574-19544653)
chr8 (140-220)||(19588043-19588122)
chr8 (140-222)||(14939630-14939711)
chr8 (129-199)||(6428879-6428949)
chr8 (129-177)||(36535874-36535922)
chr8 (129-183)||(3375457-3375511)
chr8 (264-352)||(26680849-26680937)
[»] chr1 (5 HSPs)
chr1 (97-235)||(48941702-48941844)
chr1 (129-211)||(17449436-17449518)
chr1 (101-186)||(16808573-16808658)
chr1 (151-222)||(5924831-5924901)
chr1 (213-254)||(38999865-38999906)
[»] scaffold0057 (1 HSPs)
scaffold0057 (140-235)||(58888-58982)
[»] scaffold0006 (1 HSPs)
scaffold0006 (156-222)||(39259-39325)
[»] chr5 (3 HSPs)
chr5 (142-200)||(20012959-20013017)
chr5 (173-235)||(25076182-25076244)
chr5 (173-235)||(25134151-25134213)
[»] scaffold0286 (1 HSPs)
scaffold0286 (96-157)||(15255-15316)


Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 8915788 - 8915401
Alignment:
Q  17 agaatatatatatgatctacatagggaatgaaaaagatggtatttgctggttggattttaggtatgtgaacttgtcactatgtagaaaatcgtagaatca 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| |||    
T  8915788 agaatatatatatgatctacataaggaatgaaaaagatggtatttgctggttggattttaggtctgtgaacttgccactgtgtagaaaatcgtagagtca 8915689  T
Q  117 tagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataa 216  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  8915688 tagagataaaaatcatagatgtaagcaagagagcaagcataagagtactcgtgtggaagatactcatagaaacttattatagaaatgaatagattaataa 8915589  T
Q  217 aagatgctaaatgagtacatactaatccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaa 316  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8915588 aagatgctaaatgagtacataatagtccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacgaactaacttataactaa 8915489  T
Q  317 ctattaagtaatcctaattaaccaactgaatcctaagaatcttaacacactatgataatgtcacaaattgtttaatgacactttgatt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8915488 ctattaagtaatcctaattaaccaactgaatcctaagaatcttaacacactgtgataatgtcacaaattgtttaatgacactttgatt 8915401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 102 - 364
Target Start/End: Original strand, 20985804 - 20986066
Alignment:
Q  102 aaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaa 201  Q
    |||||||||||||||||| ||| || ||||||||||||| ||||   | |||||||||||||||| ||||| ||||||| ||| ||| ||||||||||||    
T  20985804 aaaatcgtagaatcatagggatcaagatcatagatgtaatcaagtttgcaagcataagagtactcatgtggtagatacttataaaaattcattatagaaa 20985903  T
Q  202 tgaatagattaataaaagatgctaaatgagtacatactaatccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaa 301  Q
    |||||||||| |||||||||   |||||||||||||||| ||| ||||||||||||||||||||||||| || ||| ||| ||||||| |||||||| ||    
T  20985904 tgaatagattgataaaagatagcaaatgagtacatactagtccatatttataggacttaatggactaacaaactgtgtaactaacttctaactccactaa 20986003  T
Q  302 ctaacttataactaactattaagtaatcctaattaaccaactgaatcctaagaatcttaacac 364  Q
    ||||||| |||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||    
T  20986004 ctaacttgtaactaactattaactaatcttaattaacaaactaaatcctaagaatcttaacac 20986066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 5377104 - 5376980
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  5377104 gaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagat 5377005  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||  | ||||||||||    
T  5377004 tgataaaagatattgaatgagtaca 5376980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 5378959 - 5378835
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  5378959 gaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagat 5378860  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||  | ||||||||||    
T  5378859 tgataaaagatattgaatgagtaca 5378835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 1088676 - 1088782
Alignment:
Q  129 tcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactc-atagaaactcattatagaaatgaatagattaataaaagatgctaaa 227  Q
    |||||||||||||||||| || || ||||||||||||| | |||||||||||| | ||||||||||||||| |||||||||||| |||||||||| | ||    
T  1088676 tcatagatgtaagcaagatagcaaacataagagtactcatatgggagatactcaaaagaaactcattatag-aatgaatagattgataaaagatgatgaa 1088774  T
Q  228 tgagtaca 235  Q
    ||||||||    
T  1088775 tgagtaca 1088782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 19645305 - 19645429
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||| ||||| || ||| |||||||||||| || |||||||||||| ||||| ||||| ||||||| |||||||    
T  19645305 gaatcatagggagaaaagtcatagatgtaaccaagatagcaagtataagagtactcatgagggagatactcaaagaaattcattgtagaaataaatagat 19645404  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||  | ||||||||||    
T  19645405 tgataaaagataatgaatgagtaca 19645429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 31529018 - 31528957
Alignment:
Q  96 atgtagaaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcata 157  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||||||| || |||||||    
T  31529018 atgtagaaaattgtagaatcatagggatgaagatcatagatgtaagcaagatagcaagcata 31528957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 9415277 - 9415205
Alignment:
Q  128 atcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaa 200  Q
    |||||| |||||| ||| |||  || ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  9415277 atcataaatgtaaacaaaagaacaaacataagagtactcatgtgggagatactcatagaaactcattgtagaa 9415205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 24544818 - 24544763
Alignment:
Q  138 taagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcat 193  Q
    ||||||||| || |||||||||||||||| || |||||||||||||||||||||||    
T  24544818 taagcaagaaagcaagcataagagtactcatgagggagatactcatagaaactcat 24544763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 15149108 - 15149167
Alignment:
Q  176 atactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 235  Q
    ||||||| ||||||||||| |||||||||||||||| |||||||||  | ||||||||||    
T  15149108 atactcaaagaaactcattgtagaaatgaatagattgataaaagataatgaatgagtaca 15149167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 30488632 - 30488552
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagat 221  Q
    ||||||| || |||||||| | ||||| ||||| ||||||  ||| ||||||||||||| |||||||||||| |||||||||    
T  30488632 agcaagaaagtaagcataaaaatactcatgtggaagataccgataaaaactcattatag-aatgaatagattgataaaagat 30488552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 2161790 - 2161851
Alignment:
Q  96 atgtagaaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcata 157  Q
    |||| ||||||| | ||||||||| |||||| ||||||| ||||||||||| ||| ||||||    
T  2161790 atgttgaaaatcatggaatcatagggatgaagatcatagttgtaagcaagatagagagcata 2161851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 244 - 363
Target Start/End: Complemental strand, 18776857 - 18776738
Alignment:
Q  244 cttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaactattaagtaatcctaattaaccaact 343  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  18776857 cttatttataggacttaatggactaaccaattgtgtaactaacttccaactccactaactaacttgtaactaactattaactaatcctaattaaccaact 18776758  T
Q  344 gaatcctaagaatcttaaca 363  Q
     |||| ||||||||||||||    
T  18776757 taatcttaagaatcttaaca 18776738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 29758346 - 29758222
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||||||||| || |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||    
T  29758346 gaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagat 29758247  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||  | ||||||||||    
T  29758246 tgataaaagataatgaatgagtaca 29758222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 18612074 - 18612153
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaag 219  Q
    ||||||| || |||||||||||||||| ||||||||||| | | | |||||||||||||||||||||||||| |||||||    
T  18612074 agcaagaaagcaagcataagagtactcatgtgggagatatttacaaaaactcattatagaaatgaatagattgataaaag 18612153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 8759115 - 8759193
Alignment:
Q  157 aagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 235  Q
    |||||||||| || |||||||||||| ||||||||||| |||||||||| ||||| |||||||||| | ||||||||||    
T  8759115 aagagtactcatgagggagatactcaaagaaactcattgtagaaatgaacagattgataaaagatgatgaatgagtaca 8759193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 31155522 - 31155567
Alignment:
Q  96 atgtagaaaatcgtagaatcatagagatgaaaatcatagatgtaag 141  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||    
T  31155522 atgtagaaaatcgtagaatcatagggatgaagatcatagatgtaag 31155567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 225 - 363
Target Start/End: Complemental strand, 27737895 - 27737757
Alignment:
Q  225 aaatgagtacatactaatccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaactattaag 324  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| ||||||||| ||||||||||||||     
T  27737895 aaatgagtacatactagtccttatttataggacttattggactaaccaattgtgtaactaacttcaaactccactaactaacttgtaactaactattaac 27737796  T
Q  325 taatcctaattaaccaactgaatcctaagaatcttaaca 363  Q
    ||| ||||||||||    | |||||||||||||||||||    
T  27737795 taaccctaattaacactttaaatcctaagaatcttaaca 27737757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 18656334 - 18656210
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||||||||| || |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||    
T  18656334 gaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagat 18656235  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||| | ||||||||||    
T  18656234 tgataaaagatgatgaatgagtaca 18656210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 7040587 - 7040463
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||||||||| || |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||    
T  7040587 gaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagat 7040488  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||  | ||||||||||    
T  7040487 tgataaaagataatgaatgagtaca 7040463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 23564680 - 23564804
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||||||| | || |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||    
T  23564680 gaatcatagggagaaaagtcatagatgtaagcaaaatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagat 23564779  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||  | ||||||||||    
T  23564780 tgataaaagataatgaatgagtaca 23564804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 56074680 - 56074762
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatg 222  Q
    ||||||| || |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  56074680 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcgttatagaaatgaatagaatgataaaagatg 56074762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 52545149 - 52545217
Alignment:
Q  152 agcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagat 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  52545149 agcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagat 52545217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 52519001 - 52518911
Alignment:
Q  96 atgtagaaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcataga 186  Q
    |||| ||||||| | ||||||||| ||  || |||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  52519001 atgttgaaaatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaagcataagagaactcatgtgggagatactcataga 52518911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 52520838 - 52520753
Alignment:
Q  101 gaaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcataga 186  Q
    ||||||| | ||||||||| ||  || |||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||    
T  52520838 gaaaatcatggaatcatagggagaaagatcatagatgtaagaaagagagcaagcataagagtactcatgtgggagatactcataga 52520753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 54296614 - 54296530
Alignment:
Q  151 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagatt-aataaaagatgctaaatgagtaca 235  Q
    |||||||||||||||  || ||||||||||||||||||||||||||| |||||||| |||| | ||||||||  | ||||||||||    
T  54296614 aagcataagagtactgatgagggagatactcatagaaactcattata-aaatgaattgattgattaaaagatcatgaatgagtaca 54296530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 23566392 - 23566445
Alignment:
Q  129 tcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactca 182  Q
    |||||||||||||||||| || |||||||||||||| | || ||||||||||||    
T  23566392 tcatagatgtaagcaagatagcaagcataagagtacccatgagggagatactca 23566445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 18395677 - 18395730
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcat 193  Q
    ||||||| ||| |||||||||||| || ||||||||||||||||| | ||||||    
T  18395677 agcaagaaagagagcataagagtattcatgtgggagatactcatatagactcat 18395730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 17402787 - 17402911
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  17402787 gaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagat 17402886  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||  | ||||||||||    
T  17402887 tgataaaagatattgaatgagtaca 17402911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 1140227 - 1140103
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||||||||| || |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||    
T  1140227 gaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagat 1140128  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||| | ||||||||||    
T  1140127 tgataaaagatgatgaatgagtaca 1140103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 6789828 - 6789722
Alignment:
Q  129 tcatagatgtaagcaa-gagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaa 227  Q
    |||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| | |||||||  | ||    
T  6789828 tcatagatgtaagcaaagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtag-aatgaatagattgaaaaaagatagtgaa 6789730  T
Q  228 tgagtaca 235  Q
    ||||||||    
T  6789729 tgagtaca 6789722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 36472359 - 36472287
Alignment:
Q  291 aactccacaaactaacttataactaactattaagtaatcctaattaaccaactgaatcctaagaatcttaaca 363  Q
    |||||||| ||||||||| |||||||||||||| |||  |||||||||  ||| |||||||||||||||||||    
T  36472359 aactccactaactaacttgtaactaactattaactaactctaattaacacactaaatcctaagaatcttaaca 36472287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 28014295 - 28014402
Alignment:
Q  128 atcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaa 227  Q
    ||||||||||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||   ||    
T  28014295 atcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatgaataa 28014394  T
Q  228 tgagtaca 235  Q
    ||||||||    
T  28014395 tgagtaca 28014402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 20046500 - 20046607
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||||| ||| || |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  20046500 gaatcatagggagaaaagtcatagatgtaagcgagatagcaagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagat 20046599  T
Q  211 taataaaa 218  Q
    | ||||||    
T  20046600 tgataaaa 20046607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 31822306 - 31822444
Alignment:
Q  225 aaatgagtacatactaatccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaactattaag 324  Q
    |||||||||||||||  ||| ||||||||||||| |   |||||||||||||| ||| ||||||| |||||||| ||||||||| |||| |||||||||     
T  31822306 aaatgagtacatacttgtccatatttataggactaatcagactaaccaattgtgtaactaacttcaaactccactaactaacttgtaaccaactattaac 31822405  T
Q  325 taatcctaattaaccaactgaatcctaagaatcttaaca 363  Q
    ||| ||||||||||  ||| |||||||| ||||||||||    
T  31822406 taaccctaattaacacactaaatcctaataatcttaaca 31822444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 44963389 - 44963265
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| ||||||||||||| |||| || ||||||||||||| || || |||||||||||| ||||| ||||| |||||||||||||||    
T  44963389 gaatcatagggagaaaagtcatagatgtaagtaagatagcaagcataagagtattcatgagggagatactcaaagaaattcattgtagaaatgaatagat 44963290  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||| | ||||||||||    
T  44963289 tgataaaagatgatgaatgagtaca 44963265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 7165677 - 7165586
Alignment:
Q  225 aaatgagtacatactaatccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaa 316  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| ||||||||  |||||||    
T  7165677 aaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaacttcaaactccactaactaactattaactaa 7165586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 25471793 - 25471900
Alignment:
Q  128 atcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaa 227  Q
    |||||||||||||| |||| || |||||||||| || ||  |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||   ||    
T  25471793 atcatagatgtaagaaagatagcaagcataagattattcacgtgggagatactaatagaaactcattatataaatgaatagattgataaaagatgaataa 25471892  T
Q  228 tgagtaca 235  Q
    ||||||||    
T  25471893 tgagtaca 25471900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 28126404 - 28126494
Alignment:
Q  96 atgtagaaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcataga 186  Q
    |||| ||||||| | ||||||||| ||  || |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  28126404 atgttgaaaatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactcataga 28126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 28124582 - 28124667
Alignment:
Q  101 gaaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcataga 186  Q
    ||||||| | ||||||||| ||  || |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  28124582 gaaaatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactcataga 28124667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 4895820 - 4895735
Alignment:
Q  101 gaaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcataga 186  Q
    ||||||| | ||||||||| ||  || |||||||||||||||||||||| || ||||||||||||| | |||||||||||||||||    
T  4895820 gaaaatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaaacataagagtactcatctgggagatactcataga 4895735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 8405716 - 8405628
Alignment:
Q  128 atcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataa 216  Q
    |||||| |||||||||| | || ||||||||||||| || || |||||||| || |||||||||||| ||||||||| |||||| ||||    
T  8405716 atcatatatgtaagcaaaatagcaagcataagagtattcatgggggagataatcgtagaaactcattgtagaaatgactagattgataa 8405628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 29598006 - 29598059
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcat 193  Q
    ||||||| ||| |||||||||||| || |||||||||||| |||||| ||||||    
T  29598006 agcaagaaagagagcataagagtattcatgtgggagatacccatagagactcat 29598059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 225 - 363
Target Start/End: Complemental strand, 13525 - 13387
Alignment:
Q  225 aaatgagtacatactaatccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaactattaag 324  Q
    |||||||||||||||| ||| ||||||||||||| | | |||||||||||||| ||| ||||||| |||| ||| ||||||||| ||||||||||||||     
T  13525 aaatgagtacatactagtccatatttataggactaattagactaaccaattgtgtaactaacttcaaactacactaactaacttgtaactaactattaac 13426  T
Q  325 taatcctaattaaccaactgaatcctaagaatcttaaca 363  Q
    ||| || |||||||  ||| |||||||||||||||||||    
T  13425 taacccaaattaacacactaaatcctaagaatcttaaca 13387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 13158 - 13065
Alignment:
Q  270 ccaattgtttaattaacttccaactccacaaactaacttataactaactattaagtaatcctaattaaccaactgaatcctaagaatcttaaca 363  Q
    |||||||| ||| ||||||| |||| ||| ||||||||| |||||||||||||| ||| || |||||||  ||| |||||||||||||||||||    
T  13158 ccaattgtgtaactaacttcaaactacactaactaacttgtaactaactattaactaacccaaattaacacactaaatcctaagaatcttaaca 13065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 13319 - 13226
Alignment:
Q  270 ccaattgtttaattaacttccaactccacaaactaacttataactaactattaagtaatcctaattaaccaactgaatcctaagaatcttaaca 363  Q
    |||||||| ||| ||||||| |||| ||| ||||||||| |||||||||||||| ||| || |||||||  ||| |||||||||||||||||||    
T  13319 ccaattgtgtaactaacttcaaactacactaactaacttgtaactaactattaactaacccaaattaacacactaaatcctaagaatcttaaca 13226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 357
Target Start/End: Complemental strand, 15083 - 15017
Alignment:
Q  291 aactccacaaactaacttataactaactattaagtaatcctaattaaccaactgaatcctaagaatc 357  Q
    |||| ||| ||||||||| |||||||||||||| ||| ||||||||||  ||| |||||||||||||    
T  15083 aactacactaactaacttgtaactaactattaactaaccctaattaacacactaaatcctaagaatc 15017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 19171 - 19063
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  |||||||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||||||||    
T  19171 gaatcatagggagaaaaatcatagatgtaagcaagatagaaagcataggagtactcatgtgggagatgctcatagaaactcattatag-aatgaatagat 19073  T
Q  211 taataaaaga 220  Q
    | ||||||||    
T  19072 tgataaaaga 19063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 5567661 - 5567528
Alignment:
Q  102 aaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaa 201  Q
    |||||| | ||||||||| ||  ||| |||||||||||||||||| || |||||||||||||||| || |||||||||||| || |||||||| ||||||    
T  5567661 aaaatcatggaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaa 5567562  T
Q  202 tgaatagattaataaaagatgctaaatgagtaca 235  Q
    |||||||||| |||||||||| | ||||||||||    
T  5567561 tgaatagattgataaaagatgatgaatgagtaca 5567528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 30224456 - 30224332
Alignment:
Q  111 gaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagat 210  Q
    ||||||||| ||  ||| |||||||||||||||||| || |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||    
T  30224456 gaatcatagggagaaaagtcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagat 30224357  T
Q  211 taataaaagatgctaaatgagtaca 235  Q
    | |||||||||  | ||||||||||    
T  30224356 tgataaaagataatgaatgagtaca 30224332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 31032038 - 31032118
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagat 221  Q
    ||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  31032038 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagat 31032118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 25249231 - 25249108
Alignment:
Q  112 aatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagatt 211  Q
    |||||||| ||  ||| ||||| |||||||||||| || ||||||||| |||||| || |||||||||||| || |||||||| ||||||||||||||||    
T  25249231 aatcatagggagaaaagtcatatatgtaagcaagatagcaagcataagggtactcatgagggagatactcaaagtaactcattgtagaaatgaatagatt 25249132  T
Q  212 aataaaagatgctaaatgagtaca 235  Q
     |||||||||  | ||||||||||    
T  25249131 gataaaagatcatgaatgagtaca 25249108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 3379149 - 3379243
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 235  Q
    ||||||| || ||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| | ||||||||||    
T  3379149 agcaagaaagcaagtataaaagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaaaatgatgaatgagtaca 3379243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 19473728 - 19473649
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaaga 220  Q
    ||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  19473728 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgatagaaga 19473649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 19544653 - 19544574
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaaga 220  Q
    ||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  19544653 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgatagaaga 19544574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 19588043 - 19588122
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaaga 220  Q
    ||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  19588043 agcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgatagaaga 19588122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 14939711 - 14939630
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatg 222  Q
    ||||||| || ||||||| |||||||| ||| | |||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  14939711 agcaagaaagcaagcatatgagtactcatgtagaagatactcgtagaaactcattatag-aatgaatagattgataaaagatg 14939630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 6428949 - 6428879
Alignment:
Q  129 tcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattataga 199  Q
    ||||||||||||| |||| || || ||||||||||||| |||| |||||||||| ||||||||||| ||||    
T  6428949 tcatagatgtaagtaagatagcaaacataagagtactcatgtgagagatactcaaagaaactcattgtaga 6428879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 36535874 - 36535922
Alignment:
Q  129 tcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagat 177  Q
    |||||||||||||||||| || |||||||||||||||| ||||||||||    
T  36535874 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 36535922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 3375457 - 3375511
Alignment:
Q  129 tcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcat 183  Q
    ||||||||||||| |||| || ||||| |||||||||| ||||||||||||||||    
T  3375457 tcatagatgtaagtaagatagcaagcaaaagagtactcatgtgggagatactcat 3375511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 352
Target Start/End: Complemental strand, 26680937 - 26680849
Alignment:
Q  264 gactaaccaattgtttaattaacttccaactccacaaactaact-tataactaactattaagtaatcctaattaaccaactgaatcctaa 352  Q
    |||||||||||||| |||  |||||| |||| | | |||||| | | |||||||||| ||| ||||||||||||||||||| ||||||||    
T  26680937 gactaaccaattgtgtaaccaacttctaacttctctaactaattgtgtaactaactaataactaatcctaattaaccaact-aatcctaa 26680849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 97 - 235
Target Start/End: Complemental strand, 48941844 - 48941702
Alignment:
Q  97 tgtagaaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcat--t 194  Q
    ||||||||||||||||||||||| || ||| || ||||||||||||||||||| ||| ||||||||| || |||| |||||||||||| ||||||||  |    
T  48941844 tgtagaaaatcgtagaatcatagggacgaagattatagatgtaagcaagagagcaagtataagagtattcatgtgagagatactcatataaactcattat 48941745  T
Q  195 atagaaatgaatagatt--aataaaagatgctaaatgagtaca 235  Q
    |||||||||||||||||  | |||||||| || ||||||||||    
T  48941744 atagaaatgaatagatttgattaaaagatactgaatgagtaca 48941702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 17449518 - 17449436
Alignment:
Q  129 tcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagatt 211  Q
    |||||||||||||||||| || ||||| |||||||||| |||||||||||||||||||| |||||| |||| |||||||||||    
T  17449518 tcatagatgtaagcaagatagcaagcaaaagagtactcatgtgggagatactcatagaatctcattgtagacatgaatagatt 17449436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 16808573 - 16808658
Alignment:
Q  101 gaaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcataagagtactcgtgtgggagatactcataga 186  Q
    ||||||| | ||||||||| ||  || |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  16808573 gaaaatcatggaatcatagggagaaagatcatagatgtaagcaagagagcaagcataagagtactcatgtcggagatactcataga 16808658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 5924831 - 5924901
Alignment:
Q  151 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatg 222  Q
    ||||||||||||| || | | ||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  5924831 aagcataagagtattcatataggagatactcatagaaactcattatag-aatgaatagattgataaaagatg 5924901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 38999865 - 38999906
Alignment:
Q  213 ataaaagatgctaaatgagtacatactaatccttatttatag 254  Q
    |||||||||| ||||||||||||||||| | |||||||||||    
T  38999865 ataaaagatgataaatgagtacatactagttcttatttatag 38999906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 58982 - 58888
Alignment:
Q  140 agcaagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 235  Q
    ||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||||||    
T  58982 agcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagatgatgaatgagtaca 58888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 39325 - 39259
Alignment:
Q  156 taagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatg 222  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  39325 taagagtactcatgtgggagatactcataaaaactcattatagaaatgaatagattgataaaagatg 39259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 20012959 - 20013017
Alignment:
Q  142 caagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaa 200  Q
    ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20012959 caagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaa 20013017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 25076182 - 25076244
Alignment:
Q  173 gagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 235  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||| | || |||||||    
T  25076182 gagatattcatagaaactcattatagaaatgaatatattgataaaagatgatgaaagagtaca 25076244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 25134151 - 25134213
Alignment:
Q  173 gagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 235  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||| | || |||||||    
T  25134151 gagatattcatagaaactcattatagaaatgaatatattgataaaagatgatgaaagagtaca 25134213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 15316 - 15255
Alignment:
Q  96 atgtagaaaatcgtagaatcatagagatgaaaatcatagatgtaagcaagagagaaagcata 157  Q
    |||| ||||||| | ||||||||| |||||| ||||||| ||||||||||| ||| ||||||    
T  15316 atgttgaaaatcatggaatcatagggatgaagatcatagttgtaagcaagatagagagcata 15255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University