View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15725_low_5 (Length: 373)
Name: NF15725_low_5
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15725_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 42336147 - 42335803
Alignment:
| Q |
1 |
gaatatatatgactatattatgttgttatagtacaactcaaagtctgcacttttcttgtcaaacaaataaatattccatgcacctcataacaagttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42336147 |
gaatatatatgactatattatgttgttatagtacaactcaaagtctgcacttttcttgtcaaacaaataaatattccatgcacctcataacaagttgccc |
42336048 |
T |
|
| Q |
101 |
ctttaaaatcccggtcattgaaaattgaaaccatataaatcaatggctaatattgaatt-gggtatgatacacaaattctatcatccgtgtatgctaaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42336047 |
ctttaaaatcccggtcattgaaaattgaaaccatataaatcaatggctaatattgaattggggtatgatacacaaattctatcatccgtgtatgctaaat |
42335948 |
T |
|
| Q |
200 |
gtcaccatgactacgatcttaaaatcaaaggcaatcattttctttctttggcataacaacaactcccaaagatatccagtatgtaaacttgaagtgtaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42335947 |
gtcaccatgactacgatcttaaaatcaaaggcaatcattttctttctttggcat---aacaactcccaaagatatccagtatgtaaacttgaagtgtaaa |
42335851 |
T |
|
| Q |
300 |
gttataagttataaaagatatcccgtatgcaaacatgaggttcaagct |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42335850 |
gttataagttataaaagatatcccgtatgcaaacatgaggttcaagct |
42335803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University