View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15725_low_6 (Length: 362)

Name: NF15725_low_6
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15725_low_6
NF15725_low_6
[»] chr8 (1 HSPs)
chr8 (9-362)||(34634956-34635307)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 34634956 - 34635307
Alignment:
Q  9 cacttgccaaaaattgaatatataaaacaatgtagcttcaagtgattgaatgttgtgtaatataaactcaacaaaacactatgcaataaataagggtgnn 108  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  34634956 cacttgccaaaacttgaatatataaaacaatgtagcttcaagtgattgaatgttgtgtaatataaactcaacaaaacactatgcaataaataagggtgtt 34635055  T
Q  109 nnnnnnnngaagaaatactataagggtgtttattacctataattacgatagtcgtaaccatattacacctacttcatttctcacaaccgcaatttaaaat 208  Q
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34635056 ttttttttgaagaaatactataagggtgtttattacctataattgcgatagtcgtaaccatattacacctacttcatttctcacaaccgcaatttaaaat 34635155  T
Q  209 cttaattacattgctggatttacacaatatcaaaaatactgtttgaatccttnnnnnnnnnnnccgtttgaatctttgagattatccactaatctagaca 308  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||           | |||||||||||||||||||||||||||||||||||    
T  34635156 cttaattacattgctggatttacacaatatc-aaaatactgtttgaatcctt-taaaaaaaaactgtttgaatctttgagattatccactaatctagaca 34635253  T
Q  309 tttatgagcttaaagaaacatataatgatttctccttgaactatatttttcgac 362  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34635254 tttatgagcctaaagaaacatataatgatttctccttgaactatatttttcgac 34635307  T

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