View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15725_low_7 (Length: 347)
Name: NF15725_low_7
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15725_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 7624399 - 7624068
Alignment:
| Q |
1 |
ttaatttgtttttccctattcaaatagattgctgttgttatacgtacaaaacttatttatatccttaatccttaatcatcatcacatatatttcatattt |
100 |
Q |
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| T |
7624399 |
ttaatttgtttttccctattcaaatagattgctgttgttatacgtacaaaacttatttatatccttaatccttaatcatcatcacatatatttcatattt |
7624300 |
T |
|
| Q |
101 |
cataaccatagccacatacataacataaattaaccatgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaa |
200 |
Q |
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| T |
7624299 |
cataaccatagccacatacataacataaattaaccatgtctctatggttcattgcaatagctagtttcacattatgcatcctcatataccgttttatgaa |
7624200 |
T |
|
| Q |
201 |
atttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtct |
300 |
Q |
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| T |
7624199 |
atttgcaaaaagatcttcatcactaccacttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtct |
7624100 |
T |
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| Q |
301 |
attgcagccttggcaaaaatccatggcccttt |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7624099 |
attgcagccttggcaaaaatccatggcccttt |
7624068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 130 - 333
Target Start/End: Original strand, 7659415 - 7659618
Alignment:
| Q |
130 |
ttaaccatgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccac |
229 |
Q |
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| T |
7659415 |
ttaaccatgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccac |
7659514 |
T |
|
| Q |
230 |
ttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccc |
329 |
Q |
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| T |
7659515 |
ttccacctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaattcatggccc |
7659614 |
T |
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| Q |
330 |
tttg |
333 |
Q |
| |
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|||| |
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| T |
7659615 |
tttg |
7659618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 135 - 333
Target Start/End: Original strand, 7675047 - 7675245
Alignment:
| Q |
135 |
catgtctctatggttcattgcattagctagtttcacattatgcatcctcatataccgttttatgaaatttgcaaaaagatcttcatcactaccacttcca |
234 |
Q |
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||||||||||||| |||||||||| |||||| || ||||| ||| | ||||||||||| |||| ||||||| |||| |||||||||||||||| ||| |
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| T |
7675047 |
catgtctctatggctcattgcattctctagttgcatattatcaatcttaatataccgtttggtgaagtttgcaacaagaacttcatcactaccactccca |
7675146 |
T |
|
| Q |
235 |
cctggaccaaaaccatggcctataataggtaacatgccacacttgggtcctgccccacaccagtctattgcagccttggcaaaaatccatggccctttg |
333 |
Q |
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|||||||||||||||||||| |||||||||||| | |||||| | || ||||| |||||||| ||| ||||| ||||||| ||| | ||||||||||| |
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| T |
7675147 |
cctggaccaaaaccatggccaataataggtaacttaccacaccttggccctgcaccacaccaatctcttgcaaccttggctgaaacctatggccctttg |
7675245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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