View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15725_low_8 (Length: 339)
Name: NF15725_low_8
Description: NF15725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15725_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 52109297 - 52108980
Alignment:
| Q |
17 |
aacctgtggtgacttatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagccaccttcttcatttt |
116 |
Q |
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| T |
52109297 |
aaccggtggtgaattatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagtcaccttcttcatttt |
52109198 |
T |
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| Q |
117 |
caccacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgtta |
216 |
Q |
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| T |
52109197 |
catcacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgtta |
52109098 |
T |
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| Q |
217 |
atgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaacaatttcaaacaattttagggttttactattcaatctctatgg |
316 |
Q |
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| T |
52109097 |
atgtttccaagctaatttctcaccaattaaatccaaatccacttccaaatcccca---aatttcaaacaattttagggttttactattcaatctctatgg |
52109001 |
T |
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| Q |
317 |
aacccaagattccaaacttcc |
337 |
Q |
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| T |
52109000 |
aacccaagattccaaatttcc |
52108980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 44526294 - 44526207
Alignment:
| Q |
125 |
tccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaat |
212 |
Q |
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| T |
44526294 |
tccataattctgcacccagtgcttcacttcctctatcaaatcaatgctcacaagaagaaaattcctcactatattctcatcacgcaat |
44526207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 44520314 - 44520252
Alignment:
| Q |
275 |
aatttcaaacaattttagggttttactattcaatctctatggaacccaagattccaaacttcc |
337 |
Q |
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| T |
44520314 |
aatttcaaacaattttagggttttattcttcaatctctatggaacccaagattccaaatttcc |
44520252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 44520388 - 44520337
Alignment:
| Q |
217 |
atgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatcc |
268 |
Q |
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| T |
44520388 |
atgtttctaagctaatttcacaccaattatatccaaatgcacttccacatcc |
44520337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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