View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15726_high_2 (Length: 385)

Name: NF15726_high_2
Description: NF15726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15726_high_2
NF15726_high_2
[»] chr2 (1 HSPs)
chr2 (18-379)||(17922416-17922780)
[»] chr6 (11 HSPs)
chr6 (18-379)||(12949445-12949808)
chr6 (102-379)||(12908016-12908295)
chr6 (102-379)||(12933105-12933384)
chr6 (188-375)||(18555914-18556102)
chr6 (188-354)||(12958929-12959096)
chr6 (18-106)||(12900658-12900746)
chr6 (18-79)||(12959203-12959264)
chr6 (181-241)||(12900486-12900546)
chr6 (20-92)||(18556194-18556266)
chr6 (276-323)||(12900431-12900478)
chr6 (102-156)||(12900553-12900607)
[»] chr5 (6 HSPs)
chr5 (218-379)||(10612557-10612718)
chr5 (20-78)||(10613358-10613416)
chr5 (46-109)||(10605861-10605924)
chr5 (277-328)||(10716248-10716299)
chr5 (243-344)||(10565883-10565983)
chr5 (47-99)||(10761839-10761891)


Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 17922416 - 17922780
Alignment:
Q  18 agaatgacgataaatatgggagaattatcaattctcacatcatttaattagaaagcaatacagaaaacattgtttatttatagcaactagtatactaagc 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922416 agaataacgataaatatgggagaattatcaattctcacatcatttaattagaaagcaatacagaaaacattgtttatttatagcaactagtatactaagc 17922515  T
Q  118 attgccacttgtgattccagctgaccattcattttcttagcaaagtacattatgctgcataacttctctttccacaaatgacttagaaattttgttcaag 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922516 attgccacatgtgattccagctgaccattcattttcttagcaaagtacattatgctgcataacttctctttccacaaatgacttagaaattttgttcaag 17922615  T
Q  218 acctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgc---acaacaagatgattaaaataaaattctaat 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  17922616 acctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaacaacaagatgattaaaataaaattctaat 17922715  T
Q  315 tccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatcagttcatctcac 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922716 tccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatcagttcatctcac 17922780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 12949808 - 12949445
Alignment:
Q  18 agaatgacgataaatatgggagaattatcaattctcacatca--tttaattagaaagcaatacagaaaacattgtttatttatagcaactagtatactaa 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12949808 agaatgaagataaatatgggagaattatcaattctcacatcacatttaattagaaagcaatacagaaaacattgtttatttatagcaactagtatactaa 12949709  T
Q  116 gcattgccacttgtgattccagctgaccattcattttcttagcaaagtacattatgctgcataacttctctttccacaaatgacttagaaattttgttca 215  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12949708 gcattgccacatgtgattccagctgaccattcattttcttagcagagtacattatgctgcataacttctctttccacaaatgacttagaaattttgttca 12949609  T
Q  216 agacctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgattaaaataaaattctaatt 315  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||||||    
T  12949608 agacctgaaattaaaatcaagaaggtcattattaccattatattttgtagtctaggaattttgaaatgcacaataagatgataaaaataaaattctaatt 12949509  T
Q  316 ccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatcagttcatctcac 379  Q
     ||||||||||||||| ||||||||||||  |||||| | ||||||||||||||||||||||||    
T  12949508 tcataagcaattaatgagttggttatgattcaaataagcatataagaatatcagttcatctcac 12949445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 102 - 379
Target Start/End: Complemental strand, 12908295 - 12908016
Alignment:
Q  102 aactagtatactaagcattgccacttgtgattccagctgaccattcattttcttagc-aaagtacattatgctgcataacttctctttccacaaatgact 200  Q
    |||||||| || ||| || || || |||||||| |||||| |||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||||    
T  12908295 aactagtaaacaaagtatagcgacatgtgattcaagctgaacattcattttcttaaccaaagtacgttatgctgcatatcttctctttccacaaatgact 12908196  T
Q  201 tagaaattttgttcaagacc-tgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgatta 299  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||| |    
T  12908195 tagaaattttgttcaagaccctgaaattaaaatcaagaaggtcattattaccattatattttgtagtttgggaattttgaaatacaaaataagatgataa 12908096  T
Q  300 aaataaaattctaattccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatcagttcatctcac 379  Q
    |||||||| |||||||||||||||||||||||   | ||||||||   ||||||  |||| |||||||||||||||||||    
T  12908095 aaataaaactctaattccataagcaattaatgacgtagttatgattctaataaagatataggaatatcagttcatctcac 12908016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 102 - 379
Target Start/End: Complemental strand, 12933384 - 12933105
Alignment:
Q  102 aactagtatactaagcattgccacttgtgattccagctgaccattcattttcttagc-aaagtacattatgctgcataacttctctttccacaaatgact 200  Q
    |||||||| || ||| || || || |||||||| |||||| |||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||||    
T  12933384 aactagtaaacaaagtatagcgacatgtgattcaagctgaacattcattttcttaaccaaagtacgttatgctgcatatcttctctttccacaaatgact 12933285  T
Q  201 tagaaattttgttcaagacc-tgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgatta 299  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||| |    
T  12933284 tagaaattttgttcaagaccctgaaattaaaatcaagaaggtcattattaccattatattttgtagtttgggaattttgaaatacaaaataagatgataa 12933185  T
Q  300 aaataaaattctaattccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatcagttcatctcac 379  Q
    |||||||| ||||||||| |||||||||||||   | ||||||||   ||||||  |||| |||||||||||||||||||    
T  12933184 aaataaaactctaattccttaagcaattaatgacgtagttatgattctaataaagatataggaatatcagttcatctcac 12933105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 188 - 375
Target Start/End: Complemental strand, 18556102 - 18555914
Alignment:
Q  188 tccacaaat-gacttagaaattttgttcaagacctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcac 286  Q
    ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18556102 tccacaaattgacttagaaatattgttcaaaacctgaaattaaaatcaagaaggtaattattaccattatattttgtagtttgggaattttgaaatgcac 18556003  T
Q  287 aacaagatgattaaaataaaattctaattccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatcagttcatc 375  Q
    || |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||  |||||||||||||||||||||||||||||    
T  18556002 aataagatgataaaaataaaattctaattccataagcaattaatgagttagttatgattcaaataaacttataagaatatcagttcatc 18555914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 188 - 354
Target Start/End: Complemental strand, 12959096 - 12958929
Alignment:
Q  188 tccacaaat-gacttagaaattttgttcaagacctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcac 286  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  12959096 tccacaaattgacttagaaattttgttcaaaacctgaaattaaaatcaagaaggtcattattaccattatattttatagtttgggaattttgaaatgcac 12958997  T
Q  287 aacaagatgattaaaataaaattctaattccataagcaattaatgcgttggttatgatcgaaataaac 354  Q
    || |||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||  ||||||||    
T  12958996 aataagatgataaaaataaaattctaattccataaccaattaatgagttagttatgattcaaataaac 12958929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 12900746 - 12900658
Alignment:
Q  18 agaatgacgataaatatgggagaattatcaattctcacatcatttaattagaaagcaatacagaaaacattgtttatttatagcaacta 106  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  12900746 agaatgaagataaatatgggagaattatcaattctcacttcatttaattagaaagcaatacagaaaacattctttatttataacaacta 12900658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 12959264 - 12959203
Alignment:
Q  18 agaatgacgataaatatgggagaattatcaattctcacatcatttaattagaaagcaataca 79  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12959264 agaatgaagataaatatgggagaattatcaattctcacattatttaattagaaagcaataca 12959203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 12900546 - 12900486
Alignment:
Q  181 ttctctttccacaaatgacttagaaattttgttcaagacctgaaattaaaatcaagaaggt 241  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12900546 ttctctttgcacaaacgacttagaaattttgttcaagacctgaaattaaaatcaagaaggt 12900486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 18556266 - 18556194
Alignment:
Q  20 aatgacgataaatatgggagaattatcaattctcacatcatttaattagaaagcaatacagaaaacattgttt 92  Q
    ||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||| | || |||||||    
T  18556266 aatgaagataaatatgggagaattatcaattctaacattagttaattagaaagcaatacaaacaatattgttt 18556194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 12900478 - 12900431
Alignment:
Q  276 ttgaaatgcacaacaagatgattaaaataaaattctaattccataagc 323  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  12900478 ttgaaatgcacaacaagatgataaaaataaaattctaattccataagc 12900431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 12900607 - 12900553
Alignment:
Q  102 aactagtatactaagcattgccacttgtgattccagctgaccattcattttctta 156  Q
    |||||||| ||||||||||||| | |||||||||||| |||||||||||||||||    
T  12900607 aactagtaaactaagcattgccgcatgtgattccagcggaccattcattttctta 12900553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 379
Target Start/End: Complemental strand, 10612718 - 10612557
Alignment:
Q  218 acctgaaattaaaatcaagaag---gttattattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgattaaaataaaattctaat 314  Q
    |||||||||| |||||||||||   |  |||||||| ||||||||||| ||||| |||| |||||||||||||| |||||||| ||||| |||||   |     
T  10612718 acctgaaattcaaatcaagaagaaggccattattactattatattttgaagtttaggaaatttgaaatgcacaataagatgataaaaatcaaatt---ag 10612622  T
Q  315 tccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatcagttcatctcac 379  Q
    ||||||| |||||| || ||| ||||||||  |||||||  ||||| ||| |||| | |||||||    
T  10612621 tccataaacaattattgagttagttatgattcaaataaatatataaaaatgtcaggttatctcac 10612557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 10613416 - 10613358
Alignment:
Q  20 aatgacgataaatatgggagaattatcaattctcacatcatttaattagaaagcaatac 78  Q
    ||||| |||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||    
T  10613416 aatgaagataaatatgagagaagtatcaattctcacttcattgaattagaaagcaatac 10613358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 10605924 - 10605861
Alignment:
Q  46 caattctcacatcatttaattagaaagcaatacagaaaacattgtttatttatagcaactagta 109  Q
    ||||||| || | ||| ||||||||||||||||| | || ||||||||||||||||||||||||    
T  10605924 caattcttactttattgaattagaaagcaatacaaacaatattgtttatttatagcaactagta 10605861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 10716248 - 10716299
Alignment:
Q  277 tgaaatgcacaacaagatgattaaaataaaattctaattccataagcaatta 328  Q
    |||||||||||| |||||||| || || ||||| ||||||||||||||||||    
T  10716248 tgaaatgcacaataagatgataaagatcaaattataattccataagcaatta 10716299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 344
Target Start/End: Complemental strand, 10565983 - 10565883
Alignment:
Q  243 attattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgattaaaataaaattctaattccataagcaattaatgcgttggttatg 342  Q
    |||||||||||| ||||||||||||| |||||||| ||||||| || | ||| || ||||| ||||  ||| ||||||| ||| |||||  || ||||||    
T  10565983 attattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgataataaaaatcaaatgataactccataaccaaataatgatttagttatg 10565885  T
Q  343 at 344  Q
    ||    
T  10565884 at 10565883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 10761839 - 10761891
Alignment:
Q  47 aattctcacatcatttaattagaaagcaatacagaaaacattgtttatttata 99  Q
    ||||||||| ||||| ||||||||||||||||| | || |||||||| |||||    
T  10761839 aattctcacttcattgaattagaaagcaatacaaacaatattgtttacttata 10761891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University