View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15726_high_3 (Length: 350)
Name: NF15726_high_3
Description: NF15726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15726_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 37054738 - 37054417
Alignment:
| Q |
15 |
caaaggaaaaacaaaaggcaaggtgagtttaaatccaggactagatctgttctatcttgatgcattaggtgaagatgttgaacaacatgcttgtactttg |
114 |
Q |
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| T |
37054738 |
caaaggaaaaacaaaaggcaaggtgagtttaaatccaggactagatctgttctatcttgatgcattaggtgaagatgttgaacaacatgcttgtactttg |
37054639 |
T |
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| Q |
115 |
acaaagactagtgacaataatgttagtagttcttttactaaggaaattgtttctgttcatgaagaaaaactag---taaaaaatgaacatgaatgtgttg |
211 |
Q |
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| T |
37054638 |
acaaagactagtgacaataatgttagtagttcttttactaaggaaattgtttctgttcatgaagaagaactagtaataaaaaatgaacatgaatgtgttg |
37054539 |
T |
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| Q |
212 |
ataaaattgttcatgaagattgtgattcatcagaagatgaaagctttcattcatttgttgattcacaatcaaatacaagactttctaatgcttcagctgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054538 |
ataaaattgttcatgaagattgtgattcatcagaagatgaaagctttcattcatttgttgattcacaatcaaatacaagactttctaatgcttcagctgg |
37054439 |
T |
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| Q |
312 |
tagcctaagtgacacacaatct |
333 |
Q |
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|||||||||||||||||||||| |
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| T |
37054438 |
tagcctaagtgacacacaatct |
37054417 |
T |
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