View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15726_low_5 (Length: 321)
Name: NF15726_low_5
Description: NF15726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15726_low_5 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 1088742 - 1089036
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||| ||||||||| | |
|
|
| T |
1088742 |
tatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtagaagctgtggaattcaattggagaaaaagggttaacactgttaaaggag |
1088841 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| | || |||||||||| |||||||||| |||||||| ||||| ||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
1088842 |
ttgcatttgctctatcttatcttcatcctgattgcaccgctccaatagtgcatcgagatgtatctactagcaatatcttgctaaactctgagtggcaggc |
1088941 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||| | |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088942 |
cagtgtcgcggactttggcacagctcgactccttcaatatgattcatccaatcgaacaatagttgctggaactattggatatatagctcctggta |
1089036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 1541538 - 1541244
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||| ||||||| | || ||||||||| | |
|
|
| T |
1541538 |
tatcaatacatggagagaggaagcttattctctgtcttgtatgatgatgtagaagccgtggaattcaagtggaggaaaagggtcaacactgttaaaggag |
1541439 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
1541438 |
ttgcatttgctctttcatatcttcatcatgattgcactgctccaatagtgcattgagatgtatctactagcaatatcttgctaaactctgagtggcaggc |
1541339 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1541338 |
tagtgtgtctgactttggcacagctcgactccttcaatatgattcatccaatcgaactatagtttctggaactattggatatatagctcctggta |
1541244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 1604478 - 1604772
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||| |||| | ||||||| | |
|
|
| T |
1604478 |
tatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtagaagccgtggaattcaagtggagaaaaagggttaacactattaaaggag |
1604577 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| ||||||| |||||||||||||| |||| |||||| || ||||||||| |||||||||| | |
|
|
| T |
1604578 |
ttgcatttgctctttcatatcttcatcatgattgcactgctccaatcatgcatagagatgtatctagtagcaatatattgctaaactatgagtggcaggc |
1604677 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604678 |
tagtgtttgtgactttggcacagctcgactccttcaatataattcatccaatcgaactatagttgctggaactattggatatatagctcctggta |
1604772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 1557482 - 1557188
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |||||| |||| ||||||||| | |
|
|
| T |
1557482 |
tatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtggaagctgtggaattcaattggagaaaaagggttaacactgttaaaggag |
1557383 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||| |||||||| ||||||||||||| |||| |||||| || || | ||| ||||||||||| | |
|
|
| T |
1557382 |
ttgcatttgctctatcttatcttcatcatgattgcaatgctccaatagtgcatagagatgtatctagtagcaatatatttgttaactctgagtggcaggc |
1557283 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1557282 |
tagtgtttgtgactttggcacagctcgactccttcaatatgattcatccaatcgaactatagttgctggaactattggatatattgctcctggta |
1557188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 2329791 - 2330076
Alignment:
| Q |
10 |
atggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaaggggttgcatttg |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||| ||||||| |||||||||| |
|
|
| T |
2329791 |
atggagaaaggtagcttgttctctgtcttgtatgatgaaggtgaagccgtggaattcaattggagaaaaagggttaatgttattaaaggtgttgcatttg |
2329890 |
T |
|
| Q |
110 |
cgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcctagtgtttc |
209 |
Q |
| |
|
| || |||||||||||||||||||||||| | || ||||||||||||| ||||| |||| |||||||||||| |||||||| ||||||||||||| |
|
|
| T |
2329891 |
gtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgtatctacgggcaatatcttgctaaactctgagtggaagcctagtgtttc |
2329990 |
T |
|
| Q |
210 |
tgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
2329991 |
tgactttggcacatctcgactccttcaatatgattcatcgaatcgaactatagttgttggaacaattggatatatagctccaggta |
2330076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 2321293 - 2321578
Alignment:
| Q |
10 |
atggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaaggggttgcatttg |
109 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||||||| | ||| | ||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
2321293 |
atggagagaggaagtttgttctccgtcttgtatgatgatgcagaggccatggaattcaattggagaaaaaggcttaatgttgttaaaggggttgcctttg |
2321392 |
T |
|
| Q |
110 |
cgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcctagtgtttc |
209 |
Q |
| |
|
| || ||||||||||||||||| |||||||||||| |||| |||||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||| |
|
|
| T |
2321393 |
gcctatcatatcttcatcatgattgtacccctccaatagtgcacagagatgtatctaccagcaatatcttgctaaactctgagtggcatcctagtgtttc |
2321492 |
T |
|
| Q |
210 |
tgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2321493 |
tgactttggaacagctcgactccttcaatatgattcatcaaaccgaactatagttgctggaaccattggatatatagctcctggta |
2321578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 2337690 - 2337975
Alignment:
| Q |
10 |
atggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaaggggttgcatttg |
109 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||||| |||||||| ||||||| |||||||||| |
|
|
| T |
2337690 |
atggagaaaggtagcttgttctctggcttgtatgatgaagttgaagccgtggaattcaattggagaaaaagggttaatgttattaaaggtgttgcatttg |
2337789 |
T |
|
| Q |
110 |
cgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcctagtgtttc |
209 |
Q |
| |
|
| || |||||||||||||||||||||||| | || ||||||||||||| |||||| |||| |||||||||||| | |||||| ||||||||||||| |
|
|
| T |
2337790 |
gtctatcatatcttcatcatgattgcacccctgccattgtgcatagagatgtatctactggcaatatcttgctaaactcggagtggaagcctagtgtttc |
2337889 |
T |
|
| Q |
210 |
tgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
2337890 |
tgactttggcacatctcgaatccttcaatatgattcatcaaatcgaactatagttgttggaacaattggatatatagctccaggta |
2337975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 1106091 - 1106385
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
||||| || ||||||||||||||| |||||||| ||||||||||||| ||||||| |||||||||||||||| | |||| |||| | ||||||| | |
|
|
| T |
1106091 |
tatcagtacatggagaaaggaagcctgttctctatcttgtatgatgatgtagaagccgtggaattcaattggagaacaagggttaacactattaaaggag |
1106190 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| ||||||| ||||||||||||| |||| |||||| |||||||||||| ||||||||||| | |
|
|
| T |
1106191 |
ttgcatttgctctttcatatcttcatcatgattgcactgctccaatcgtgcatagagatgtatctagtagcaatatcttgctaaactctgagtggcaggc |
1106290 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1106291 |
cagtgtcgctgactttggcacagctcgactccttcaatatgattcatccaatcgaacaatagttgctggaactattggatatatagctcctggta |
1106385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 1550772 - 1550478
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
||||| || ||||||| ||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
1550772 |
tatcagtacatggagagaggaagcttgttcactgtcttgtatgacgatgtagaagctgtggaattcaattggagaaaaaggattagcactgttaaaggaa |
1550673 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| | || ||||||||||||||||| || |||||||| ||||||||||||| ||||||||||| |||||||||||| |||||||| || | |
|
|
| T |
1550672 |
ttgcatttgctctttcatatcttcatcatgattgtactgctccaatagtgcatagagatgtatctactagcaatatcttgctaaactctgagtggaaggc |
1550573 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1550572 |
tagtgtctctgactttggcacagctcgattccttcaatatgattcatccaatcgaactatagttgctggaactattggatatatagctcccggta |
1550478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 1596148 - 1596442
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| |||| | |||| |||| ||||||||| |
|
|
| T |
1596148 |
tatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgtagaagccgtggaattcaagtggagaacaagggttaacactgttaaaggaa |
1596247 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| | || |||||||||||||| ||||| |||||||| ||||||||||||| |||| |||||| ||||| |||||| |||| ||||| | |
|
|
| T |
1596248 |
ttgcatttgctctttcatatcttcatcatgaatgcactactccaatagtgcatagagatgtatctagtagcaatatcttactaaactctgaatggcatgc |
1596347 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1596348 |
tagtgtttgtgactttggcacatcccgactccttcaatatgattcatcaaatcgaactatagttgctggaactattggatatatagctcctggta |
1596442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 3955530 - 3955236
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||||| ||||||| || |||| | ||||| |||||| ||||||| |||| ||||||| | |
|
|
| T |
3955530 |
tatcagtatatggaaaaaggaagcttgttctccgtcttgcatgatgatgtcgaagccataaaattcgattggaggaaaagggttaacaccattaaaggag |
3955431 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||| ||| | || |||||||||||||||| |||| |||||||| ||||||||||||| ||||||||||| |||||||||||| | || |||||||| |
|
|
| T |
3955430 |
ttgcatctgctctatcatatcttcatcatgatttcacctctccaatagtgcatagagatgtatctactagcaatatcttgctaaactcagaatggcagcc |
3955331 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3955330 |
tagtgtttctgactttggcatagctcgactccttcaatatgattcatctaatcaaacaatagttggtggaactattggatatatagctcctggta |
3955236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 76 - 295
Target Start/End: Original strand, 3852669 - 3852888
Alignment:
| Q |
76 |
aaaaggcttaatgttgttaaaggggttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaaca |
175 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| ||| | || |||||||||||||||| |||| ||||||| ||||||||||||| ||||||||||| | |
|
|
| T |
3852669 |
aaaaggattaacattgttaaaggagttgcatctgctctatcatatcttcatcatgatttcacctttccaatagtgcatagagatgtatctactagcaata |
3852768 |
T |
|
| Q |
176 |
tcttgctaaacactgagtggcagcctagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactat |
275 |
Q |
| |
|
|||| |||||| | || |||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3852769 |
tctttctaaactcggaatggcagcctagtgtttctgactttggtatagctcgactccttcaatgtgattcatccaatcgaacaatagttgctggaactat |
3852868 |
T |
|
| Q |
276 |
tggatatatagctcctggta |
295 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3852869 |
tggatatatagctcctggta |
3852888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 9532112 - 9532037
Alignment:
| Q |
13 |
gagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatg |
88 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
9532112 |
gagaaaggaagtttgttctcgtttttgtatgatgatgtagaagttgtggaattcaattggagaaaaagacttaatg |
9532037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 30792410 - 30792470
Alignment:
| Q |
13 |
gagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattgga |
73 |
Q |
| |
|
|||||| |||||| ||||| ||| ||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
30792410 |
gagaaaagaagctagttctttgttttgtatgatgatgtagaagttgtgaaattcaattgga |
30792470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 1188 - 894
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||| ||||||| |||| | ||||||| | |
|
|
| T |
1188 |
tatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtaaaagtcgtggaattcaagtggaggaaaagggttaacactattaaaggag |
1089 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
1088 |
ttgcatttgctttttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgtatctactagcaatatcttgctaaactctgagtggcaggc |
989 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||||| |||||| |||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
988 |
cagtgtttgtgacttcggcatagctcggctccttcaatatgattcatccaatcgaactatagttgctggaactattggatatatagctccaggta |
894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 6075 - 5781
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
|||||||| ||||| | ||||||||| |||||||||||||||||||| ||||||| || ||||||| |||| ||||| |||| | ||||||| | |
|
|
| T |
6075 |
tatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgtagaagccctgcaattcaagtggagaaaaagagttaacactattaaaggag |
5976 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
5975 |
ttgcatttgctctttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgtatctactagcaatatcttgctaaactctgagtggcaggc |
5876 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5875 |
cagtgtttgtgacttcggcacagctcgactccttcaatatgattcatccaatcgaactatagttgctggaactattggatatatagctccgggta |
5781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 18739309 - 18739015
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||| ||||||| |||| | ||||||| | |
|
|
| T |
18739309 |
tatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtaaaagtcgtggaattcaagtggaggaaaagggttaacactattaaaggag |
18739210 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
18739209 |
ttgcatttgctttttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgtatctactagcaatatcttgctaaactctgagtggcaggc |
18739110 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||||| |||||| |||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18739109 |
cagtgtttgtgacttcggcatagctcggctccttcaatatgattcatccaatcgaactatagttgctggaactattggatatatagctccaggta |
18739015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 18744273 - 18743979
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||| ||||||| |||| | ||||||| | |
|
|
| T |
18744273 |
tatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtaaaagtcgtggaattcaagtggaggaaaagggttaacactattaaaggag |
18744174 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
18744173 |
ttgcatttgctttttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgtatctactagcaatatcttgctaaactctgagtggcaggc |
18744074 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||||| |||||| |||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18744073 |
cagtgtttgtgacttcggcatagctcggctccttcaatatgattcatccaatcgaactatagttgctggaactattggatatatagctccaggta |
18743979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 18749234 - 18748940
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
|||||||| ||||| | ||||||||| |||||||||||||||||||| ||||||| |||||||||| |||| ||||| |||| | ||||||| | |
|
|
| T |
18749234 |
tatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgtagaagccatggaattcaagtggagaaaaagagttaacactattaaaggag |
18749135 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
18749134 |
ttgcatttgctctttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgtatctactagcaatatcttgctaaactctgagtggcaggc |
18749035 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18749034 |
cagtgtttgtgacttcggcacagctcgactccttcaatatgattcatccaatcgaactatagttgctggaactattggatatatagctccgggta |
18748940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 18723582 - 18723288
Alignment:
| Q |
1 |
tatcaatatatggagaaaggaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatgttgttaaagggg |
100 |
Q |
| |
|
|||||||| ||||| | ||||||||| |||||||||||||||||||| ||||||| || ||||||| |||| ||||| |||| | ||||||| | |
|
|
| T |
18723582 |
tatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgtagaagccatgaaattcaagtggagaaaaagagttaacactattaaaggag |
18723483 |
T |
|
| Q |
101 |
ttgcatttgcgttgtcgtatcttcatcatgattgcacccctccaataatgcatagagatgtgtctactagcaacatcttgctaaacactgagtggcagcc |
200 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| |||||||||||| ||||||||||| | |
|
|
| T |
18723482 |
ttgcatttgctctttcatatcttcatcatgattgcactgctccaatagtgcatcgagatgtatctactagcaatatcttgctaaactctgagtggcaggc |
18723383 |
T |
|
| Q |
201 |
tagtgtttctgactttggcacatctcgactccttcaatatgattcatccaatcgaaccatagttgctggaactattggatatatagctcctggta |
295 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18723382 |
cagtgtttgtgacttcggcacagctcgactccttcaatatgattcatccaatcgaactatagttgctggaactattggatatatagctccgggta |
18723288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 19250517 - 19250585
Alignment:
| Q |
20 |
gaagcttgttctctgtcttgtatgatgaagtagaagttgtggaattcaattggaagaaaaggcttaatg |
88 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
19250517 |
gaagcttgttctcggttttgtatgatgatgtagaagttgtggaattcaattggagaaaaagacttaatg |
19250585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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