View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15727_high_2 (Length: 433)

Name: NF15727_high_2
Description: NF15727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15727_high_2
NF15727_high_2
[»] chr7 (4 HSPs)
chr7 (2-423)||(39155970-39156391)
chr7 (259-340)||(46726169-46726250)
chr7 (257-297)||(13040284-13040324)
chr7 (274-340)||(44677384-44677450)
[»] chr2 (3 HSPs)
chr2 (262-340)||(2713422-2713500)
chr2 (257-334)||(41073104-41073181)
chr2 (262-340)||(34233917-34233995)
[»] chr1 (3 HSPs)
chr1 (262-340)||(9534405-9534483)
chr1 (281-332)||(43024927-43024978)
chr1 (262-307)||(23931200-23931245)
[»] chr5 (2 HSPs)
chr5 (259-340)||(41583576-41583657)
chr5 (271-340)||(31558030-31558099)
[»] chr8 (3 HSPs)
chr8 (260-340)||(39691107-39691187)
chr8 (286-340)||(10893450-10893504)
chr8 (287-340)||(27734360-27734413)
[»] chr3 (1 HSPs)
chr3 (258-339)||(19898092-19898174)
[»] chr4 (4 HSPs)
chr4 (257-340)||(30624729-30624812)
chr4 (258-332)||(5839568-5839642)
chr4 (271-340)||(5798990-5799059)
chr4 (264-340)||(41370165-41370241)
[»] chr6 (2 HSPs)
chr6 (265-327)||(10364789-10364851)
chr6 (271-324)||(2963263-2963316)


Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 2 - 423
Target Start/End: Complemental strand, 39156391 - 39155970
Alignment:
Q  2 ggttattaaaatattgttttgtcatttaaaaaataaaatgccaaccggtggcaactaccacctgcaagtaaaaatgcaatttgtgcatcatgggaaaata 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||    
T  39156391 ggttattaaaatattgttttgtcatttaaaaaataaaatgccaaccggtggcaactgccacctgtaagtaaaaatgcaatttgtgcatcattggaaaata 39156292  T
Q  102 cttcccttccccaggttaaatgtcaccgatgtcttcataccatgttttttatgtgactacagtggttccggagatcaaagagaaagagtttccctaatta 201  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  39156291 cctcccttccccaggctaaatgtcaccgatgtcttcataccatgtttttcatgtgactacagtggttccggagatcaaagagaaagagttgccctagtta 39156192  T
Q  202 cttttataataattgttnnnnnnnnttatagggaaatgctgaggagtattttcataacattctttaaagacctttaatagtaaatttttatgaaaatccg 301  Q
    |||||||||||||||||         || |||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||     
T  39156191 cttttataataattgttaaatttttctaaagggaaatgctgaggagtatcttcaggacattctttaaagacctttaatagtaaatttttatgaaaatcca 39156092  T
Q  302 tatattaagtgcattgaaatttgaaatatttgactttttnnnnnnntaacttttaaatttcagaaatcatttctatattttttactattaattttcccac 401  Q
    |||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  39156091 tatattaagtgcattgaaatttaaaatatttgactttttaaagaaataacttttaaatttcagaaataatatctatattttttactattaattttcccac 39155992  T
Q  402 cctacgaggttcttgcgcaccc 423  Q
    ||||||||||||||||||||||    
T  39155991 cctacgaggttcttgcgcaccc 39155970  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 46726250 - 46726169
Alignment:
Q  259 cattctttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    ||||||||||| ||| ||||||||||||||||||||||| |  | || | | |||||||||||||| || ||||||||||||    
T  46726250 cattctttaaaaaccattaatagtaaatttttatgaaaaactatgtaatcaatgcattgaaatttgtaacatttgacttttt 46726169  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 13040284 - 13040324
Alignment:
Q  257 aacattctttaaagacctttaatagtaaatttttatgaaaa 297  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  13040284 aacattctttaaagactttaaatagtaaatttttatgaaaa 13040324  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 44677450 - 44677384
Alignment:
Q  274 tttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    |||||||||||||||||||  |||| | |||||| | ||||||| |||||| |||||||||| ||||    
T  44677450 tttaatagtaaatttttatagaaattcatatatttaatgcattgtaatttgtaatatttgacatttt 44677384  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 2713422 - 2713500
Alignment:
Q  262 tctttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    |||||||| |||||||||||||| |||| ||||||||| ||||| | | ||||||| |||||| || ||||||||||||    
T  2713422 tctttaaacacctttaatagtaagttttgatgaaaatctgtataatcattgcattggaatttgtaacatttgacttttt 2713500  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 41073104 - 41073181
Alignment:
Q  257 aacattctttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttga 334  Q
    |||| ||||||||||||||||||| ||| |||||||||||||   |||||| | |||||||||||||  |||||||||    
T  41073104 aacactctttaaagacctttaataataagtttttatgaaaatatatatattcaatgcattgaaatttataatatttga 41073181  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 34233917 - 34233995
Alignment:
Q  262 tctttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    |||||||  ||||||||||||||||||||||  ||||  || || | | |||||||||||||| |||||||||||||||    
T  34233917 tctttaagcacctttaatagtaaatttttattcaaatttgtgtaatcaatgcattgaaatttgtaatatttgacttttt 34233995  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 9534483 - 9534405
Alignment:
Q  262 tctttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    |||||||  |||||||||| |||||||||||||||||  ||| | | |||||||||||||||  |||||||||||||||    
T  9534483 tctttaagcacctttaataataaatttttatgaaaatttgtaaaattagtgcattgaaatttataatatttgacttttt 9534405  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 43024927 - 43024978
Alignment:
Q  281 gtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatattt 332  Q
    |||||||||||||||||| ||| || | |||||||||||||||| |||||||    
T  43024927 gtaaatttttatgaaaatacgtgtaatcagtgcattgaaatttgtaatattt 43024978  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 23931200 - 23931245
Alignment:
Q  262 tctttaaagacctttaatagtaaatttttatgaaaatccgtatatt 307  Q
    |||| ||||||||||||||||| |||||||||||||| ||| ||||    
T  23931200 tcttcaaagacctttaatagtagatttttatgaaaattcgtgtatt 23931245  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 41583657 - 41583576
Alignment:
Q  259 cattctttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    ||||||||||  | ||| ||||||||||||||||||||||| || |||| | ||||||| |||||| ||||||| |||||||    
T  41583657 cattctttaagaatcttcaatagtaaatttttatgaaaatctgtgtattcaatgcattggaatttgtaatatttaacttttt 41583576  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 31558030 - 31558099
Alignment:
Q  271 acctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    |||||||||| |||||||||||||||||   |||| ||| || ||||||||||| || |||||| |||||    
T  31558030 acctttaataataaatttttatgaaaatttatataataaatgtattgaaatttgtaacatttgatttttt 31558099  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 39691107 - 39691187
Alignment:
Q  260 attctttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    ||||||||| || ||| |||||||| |||||||||||||  || |||| | |||||||||| ||||| |||||||||||||    
T  39691107 attctttaaggatcttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttt 39691187  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 10893450 - 10893504
Alignment:
Q  286 tttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    ||||||| ||||| ||| |||| |||||||||||||||  |||||||||||||||    
T  10893450 tttttataaaaattcgtgtatttagtgcattgaaatttataatatttgacttttt 10893504  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 27734360 - 27734413
Alignment:
Q  287 ttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    |||||||||||||||| |||| | ||||||| |||||| |||||| ||||||||    
T  27734360 ttttatgaaaatccgtgtattcaatgcattggaatttgtaatattagacttttt 27734413  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 19898092 - 19898174
Alignment:
Q  258 acattctttaaagaccttta-atagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgactttt 339  Q
    ||||||||| |||||||||| || ||||||||||||||||||  || || | | |||||||||| ||||||||||||| ||||    
T  19898092 acattcttttaagacctttacattgtaaatttttatgaaaatatgtgtaatcaatgcattgaaaattgaaatatttgattttt 19898174  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 30624812 - 30624729
Alignment:
Q  257 aacattctttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    ||||||||||||| ||| |||||| ||| |||||||||||| |  | || | |||||||||||||||| ||  |||||||||||    
T  30624812 aacattctttaaaaaccattaataataagtttttatgaaaaactatgtaattagtgcattgaaatttgtaacttttgacttttt 30624729  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 5839642 - 5839568
Alignment:
Q  258 acattctttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatattt 332  Q
    |||||||| ||| |||||||||||||  |||||||||||||  || |||| | || |||||||||||||| ||||    
T  5839642 acattcttcaaacacctttaatagtatgtttttatgaaaatttgtgtatttaatgtattgaaatttgaaacattt 5839568  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 5798990 - 5799059
Alignment:
Q  271 acctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    |||||||||| ||||||||||| |||||  ||||| | |  ||||| ||||||| |||||||||||||||    
T  5798990 acctttaataataaatttttataaaaatttgtataatcaacgcatttaaatttgtaatatttgacttttt 5799059  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 41370165 - 41370241
Alignment:
Q  264 tttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaatatttgacttttt 340  Q
    ||||| ||| || |||||||| |||||||||||||  || || | | |||||||||| ||||||||||| |||||||    
T  41370165 tttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttt 41370241  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 327
Target Start/End: Complemental strand, 10364851 - 10364789
Alignment:
Q  265 ttaaagacctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttgaaa 327  Q
    |||| |||||| |||||||||||||||||||| | |||||| | ||||||||| || ||||||    
T  10364851 ttaaggaccttaaatagtaaatttttatgaaagttcgtataatcagtgcattgtaaattgaaa 10364789  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 2963316 - 2963263
Alignment:
Q  271 acctttaatagtaaatttttatgaaaatccgtatattaagtgcattgaaatttg 324  Q
    |||||||| |||||||||||| ||||||  ||||| | ||||||||||||||||    
T  2963316 acctttaacagtaaatttttacgaaaatttgtataatcagtgcattgaaatttg 2963263  T

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