View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15727_high_4 (Length: 388)
Name: NF15727_high_4
Description: NF15727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15727_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 341
Target Start/End: Complemental strand, 13021053 - 13020742
Alignment:
| Q |
30 |
ctgaaagggttaagtaacctgtatgtcttgtacctccttgcaagatcagtcatataatgatgaagcctgttgaagttcatcatctgattgaatacagtac |
129 |
Q |
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| T |
13021053 |
ctgaaagggttaagtaacctgtatgtcttgtatttccttgcaagatcagtcatataatgatgaagtctgttgaagttcatcatctgattgaatacagtgc |
13020954 |
T |
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| Q |
130 |
cagcaacaggatgatacttcttcttcttcatactattgcttttgttgttcaattttctgaacagaaattgagctaccaaaaaagttaaacacgcagacaa |
229 |
Q |
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| T |
13020953 |
cagcaacaggatgatacttcttcttcttcatactattgcttttgttgttcaattttctgagcagaagttgaaccaacaaaagagttaaagatgcagacaa |
13020854 |
T |
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| Q |
230 |
agctgaaaaaagataaggatttaatagaaaatccatgatggattggaatagcatggtggaggcggcgatggttttttgctttaaagaagaagttagtgtt |
329 |
Q |
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| T |
13020853 |
agctgcaaaaagaagaggatttgatagaaaatccatgatggattggaatagcatggtggaggtggcgatggttttttgctttaaagaagaagttagtgtt |
13020754 |
T |
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| Q |
330 |
gctccagagtca |
341 |
Q |
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|||||||||||| |
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| T |
13020753 |
gctccagagtca |
13020742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 341
Target Start/End: Original strand, 13072790 - 13073101
Alignment:
| Q |
30 |
ctgaaagggttaagtaacctgtatgtcttgtacctccttgcaagatcagtcatataatgatgaagcctgttgaagttcatcatctgattgaatacagtac |
129 |
Q |
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|||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |
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| T |
13072790 |
ctgaaagggttaagtagcctgtatgtcctgtatttccttgcaagatcagtcatataatgatgaagtctgttgaaattcatcatctgattgaatacagtgc |
13072889 |
T |
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| Q |
130 |
cagcaacaggatgatacttcttcttcttcatactattgcttttgttgttcaattttctgaacagaaattgagctaccaaaaaagttaaacacgcagacaa |
229 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||| | | ||||| ||||||| | |||||||| |
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| T |
13072890 |
cagcaacaggatgatactttttcttcttcatgttattgcttttgttgttcaattttctgagcagaagttgaaccaacaaaagagttaaagatgcagacaa |
13072989 |
T |
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| Q |
230 |
agctgaaaaaagataaggatttaatagaaaatccatgatggattggaatagcatggtggaggcggcgatggttttttgctttaaagaagaagttagtgtt |
329 |
Q |
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||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13072990 |
agctgcaaaaagaaaaggatttgatagaaaatccatgatggattggaatagcatggtggagatggcgatggttttttgctttaaagaagaagttagtgtt |
13073089 |
T |
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| Q |
330 |
gctccagagtca |
341 |
Q |
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| T |
13073090 |
actccagagtca |
13073101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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