View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15727_low_1 (Length: 423)
Name: NF15727_low_1
Description: NF15727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15727_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 26455856 - 26456260
Alignment:
| Q |
17 |
actttcttattagggctctcaacctttgaggggagatt-----------gagctcatctatatcgtggccaggacaccatttcagtaacaatnnnnnnnn |
105 |
Q |
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| T |
26455856 |
actttcttattagggctctcaacctttgaggggagattttcatttggttgagctcatctatatcgtggccaggacaccatttcagtaacaataaaaaaaa |
26455955 |
T |
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| Q |
106 |
tgctctcatgtgtcatgcaaagactctgcatcagcatgcttaaaatgagtgattttagcacgattttatccatgaacttggtgactgcaaacaaacgctc |
205 |
Q |
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| T |
26455956 |
tgctctcatgtgtcatgcaaagactctgcatcagcatgcttaaaatgagtgattttagcacgattttatccatgaacttggtgactgcaaacaaacgctc |
26456055 |
T |
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| Q |
206 |
caaannnnnnncttcctcaagctctaaaactcccttcgttttttcacacttatcaataacagtataaaccnnnnnnngcaccatattttcttctaaatct |
305 |
Q |
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| T |
26456056 |
caaatttttttcttcctcaagctctaaaactcccttcgttttttcacacttatcaataacagtataaacctttttttgcaccatattttcttctaaatct |
26456155 |
T |
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| Q |
306 |
tcgacctcggtatctgactttgttttcatggtgttcccaacttaagcatccaacaacattcttatttgggctctcaacctttgagtggagattttcattt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26456156 |
tcgacctcggtatctgactttgttttcatggtgttcccaacttaagcatccaacaacattcttatttgggctctcaacctttgagtggagattttcattt |
26456255 |
T |
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| Q |
406 |
ggttc |
410 |
Q |
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||||| |
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| T |
26456256 |
ggttc |
26456260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 26456315 - 26456413
Alignment:
| Q |
108 |
ctctcatgtgtcatgcaaagactctgcatcagcatgcttaaaatgagtgattttagcacgattttatccatgaacttggtgactgcaaacaaacgctcca |
207 |
Q |
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| T |
26456315 |
ctctcatgtgtcatgcaaagaatatgcatcaacatgctcaaaatgagtgactttagcacgattt--cccatgaacttggtgactgcaaataaacgctcca |
26456412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 409
Target Start/End: Original strand, 26455816 - 26455904
Alignment:
| Q |
321 |
gactttgttttcatggtgttcccaacttaagcatccaacaacattcttatttgggctctcaacctttgagtggagattttcatttggtt |
409 |
Q |
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| T |
26455816 |
gactttgtcatcatggtgttcccagctgaagcatccaccaactttcttattagggctctcaacctttgaggggagattttcatttggtt |
26455904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 26455375 - 26455414
Alignment:
| Q |
289 |
tattttcttctaaatcttcgacctcggtatctgactttgt |
328 |
Q |
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| T |
26455375 |
tattttcttctaaatctcggacctcggtatctgactttgt |
26455414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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