View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15727_low_2 (Length: 394)
Name: NF15727_low_2
Description: NF15727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15727_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 35 - 274
Target Start/End: Original strand, 11647883 - 11648120
Alignment:
| Q |
35 |
aaagatttatgttgagatttcaatataaccagaagcaaagtacacaacaaaccaaaacaaactaatgttaataaagagaaacaaattaatgatttagtat |
134 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||| | || || |
|
|
| T |
11647883 |
aaagatttatgttgagacttcaatataaccaaaagcaaagtacacaacaaagcaaaacaaactaatgttaataaaga--accaaattagtgagtaagcat |
11647980 |
T |
|
| Q |
135 |
aatcaattaactaaaaacaattgaatgcatcccaatgtaatttcaattgacttattcactttctaaatctaccttttgagaaatcatgattaattgaatg |
234 |
Q |
| |
|
||| ||||||| |||| || |||||||| | || | ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11647981 |
aattaattaaccaaaagcatatgaatgcaactcactttaattacatttgacttattcactttataaatctaccttttgagaaatcatgattaattgaatg |
11648080 |
T |
|
| Q |
235 |
aatatatttgtaaaaacacttcaattcattatagtaaact |
274 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11648081 |
aatatatttgtaaaaacatttcaattcattatagtaaact |
11648120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 279 - 361
Target Start/End: Original strand, 45637739 - 45637821
Alignment:
| Q |
279 |
gctagggtgtacaatagggtagtcaagactacttaacataaacttaatgcattctgaatcattagaaaattattttgcaatga |
361 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45637739 |
gctagggtgtgcaatggggtagtcaagactacttaacataaactttatgcattccgaatcattagaaaattattttgcaatga |
45637821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University