View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15728_high_2 (Length: 340)
Name: NF15728_high_2
Description: NF15728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15728_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 24712327 - 24712013
Alignment:
| Q |
18 |
cattcaagaaacaaccattatatataaatcccaaatccatatttctcttcattacattacataacatataaatataaatacttcttcattcatattctct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24712327 |
cattcaagaaacaaccattatatataaatcccaaatccatatttctcttcattacattacataacatataaatataaatacttcttcattcatattctct |
24712228 |
T |
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| Q |
118 |
aaacaggttcaagtgttcaactatatatattcaacttccagaaaaagtaacaaaaccttctcttctctattttttcttacataaacaagaagatgaatga |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24712227 |
aaacaggttcaagtgttcaactatagatattcaacttccagaaaaagtaacaaaaccttctcttctctattttttcttacataaacaagaagatgaatga |
24712128 |
T |
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| Q |
218 |
tttattctccggctctttctcccggttccgtaactcggatcaagtttctccggacaaccaccaccatgtgatcgaaatgtcatcaccgaacactgcacaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24712127 |
tttattctccggctctttctcccggttccgtaactcggatcaagtttcgccggacaaccaccaccatgtgatcgaaatgtcatcaccgaacactgcacaa |
24712028 |
T |
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| Q |
318 |
accggtgttcatctc |
332 |
Q |
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||||||||||||||| |
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| T |
24712027 |
accggtgttcatctc |
24712013 |
T |
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