View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15729_high_3 (Length: 402)
Name: NF15729_high_3
Description: NF15729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15729_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 50259840 - 50260226
Alignment:
| Q |
1 |
gtcatcattcttacaggactggttgctgtttttcattgttccaccaacccccaatgcacctattttcactcttcactcttcaccttataaataccaaccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50259840 |
gtcatcattcttacaggactggttgctgtttttcattgttccaccaacccccaatgcacctattttcactcttcactcttcaccttataaatagcaaccc |
50259939 |
T |
|
| Q |
101 |
aagctagatatgtcattgcattcgttctcttctccttcctagtttgtttcatttaatttaatttaataaactatgaagcaagaaaatgaccacatatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50259940 |
aagctagatatgtcattgcattcgttctcttctccttcctag-----ttaatttcatttaatttaataaactataaagcaagaaaatgaccacatatcat |
50260034 |
T |
|
| Q |
201 |
catttccttttgctacccaggtatttcagtacaccacctttttaatatattcaagctggaatgattttaacatattcaatatgtattgttttcgacatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50260035 |
catttccttttgctacccaggtatttcagtacaccacctttttaatatattcaagctggaatgattttaacatattgaatatgtattgttttcgacatat |
50260134 |
T |
|
| Q |
301 |
tctgaattaataatatatattttatttttagtaaaataaagggctttgttcatttttgtgttattcttcaacctcaacctttaatacttcat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50260135 |
tctgaattaataatatatattttatttttagtaaaataaagggctttgttcatttttttgttattcttcaacctcaacctttaatacttcat |
50260226 |
T |
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