View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15729_high_4 (Length: 379)
Name: NF15729_high_4
Description: NF15729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15729_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 2631815 - 2632176
Alignment:
| Q |
1 |
caactagagataggacaacgactccattaacatcgatggtacgtatactcaatgtaatttcgatctatctattttatacgtacaatacaggtgtagtgcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2631815 |
caactagagataggacaacgactccattaccatcgatggtacgtatactcaatgtaacatcgatctatctattttatacgtacaatacaggtgtagtgcg |
2631914 |
T |
|
| Q |
101 |
agttgaaaaattaatatattcactactactactactatagatgtataaccgtatgaatccaaaattttgaaagaaattcatcctttcatcatgagccagg |
200 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2631915 |
atttgaaaaattaatatatt---tactactactactatagatgtataaccgtatgaatccaaaattttgaaagaaattcatcctttcatcatgagccagg |
2632011 |
T |
|
| Q |
201 |
ataatttttagtatttcttgtagttattgaaagttttatttaccaaccatcactgcacttgaaatggaaaaacttgtgtattttattttcaaccagtcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2632012 |
ataatttttagtatttcttgtagttattgaaagttttatttaccaaccatcactgcacttgaaatggaaaaacttgtgtattttattttcaaccagtcag |
2632111 |
T |
|
| Q |
301 |
ctttgctacttcacagcttcaaaccactttcaattttaccaaattagttcaattcgatccaaact |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2632112 |
ctttgctacttcacagcttcaaaccactttcaattttaccaaattagttcaattcgacccaaact |
2632176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University