View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15729_low_2 (Length: 462)

Name: NF15729_low_2
Description: NF15729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15729_low_2
NF15729_low_2
[»] chr4 (48 HSPs)
chr4 (248-347)||(48870400-48870499)
chr4 (248-347)||(48886086-48886185)
chr4 (248-341)||(48875704-48875797)
chr4 (248-345)||(50250910-50251007)
chr4 (224-343)||(45372191-45372310)
chr4 (256-345)||(48170700-48170789)
chr4 (34-119)||(48852316-48852401)
chr4 (301-420)||(48898630-48898752)
chr4 (303-345)||(48852576-48852618)
chr4 (251-345)||(49044316-49044410)
chr4 (248-345)||(37827114-37827211)
chr4 (22-119)||(48170923-48171020)
chr4 (255-345)||(48705479-48705571)
chr4 (22-119)||(48735649-48735746)
chr4 (364-416)||(45384905-45384957)
chr4 (249-345)||(48891271-48891367)
chr4 (22-89)||(48148049-48148116)
chr4 (287-342)||(48863126-48863181)
chr4 (368-418)||(48147752-48147802)
chr4 (366-416)||(48735419-48735469)
chr4 (22-84)||(48862888-48862950)
chr4 (22-84)||(7238092-7238151)
chr4 (24-84)||(48898371-48898431)
chr4 (290-345)||(33133934-33133989)
chr4 (22-119)||(49041475-49041569)
chr4 (369-416)||(50250818-50250865)
chr4 (304-343)||(50672412-50672451)
chr4 (370-420)||(7877727-7877777)
chr4 (27-141)||(45366533-45366647)
chr4 (300-416)||(49041201-49041320)
chr4 (22-93)||(45372420-45372488)
chr4 (256-341)||(47207762-47207847)
chr4 (372-420)||(7908325-7908373)
chr4 (364-412)||(48902924-48902972)
chr4 (249-345)||(50668911-50669007)
chr4 (22-137)||(33134142-33134257)
chr4 (22-56)||(7771051-7771085)
chr4 (22-52)||(48902597-48902627)
chr4 (300-345)||(49048704-49048749)
chr4 (22-84)||(7774201-7774260)
chr4 (24-82)||(7822618-7822673)
chr4 (22-84)||(7904679-7904738)
chr4 (27-55)||(48156825-48156853)
chr4 (364-416)||(48705396-48705448)
chr4 (22-84)||(48870189-48870248)
chr4 (22-84)||(48885875-48885934)
chr4 (369-413)||(49048613-49048657)
chr4 (369-429)||(50669052-50669112)
[»] chr5 (8 HSPs)
chr5 (230-451)||(42562342-42562566)
chr5 (290-340)||(29688011-29688061)
chr5 (364-416)||(29696198-29696250)
chr5 (249-332)||(29712599-29712682)
chr5 (250-343)||(29696072-29696165)
chr5 (298-341)||(29261158-29261201)
chr5 (22-79)||(42562705-42562762)
chr5 (364-412)||(179026-179074)
[»] chr1 (7 HSPs)
chr1 (253-415)||(24367025-24367190)
chr1 (230-342)||(24310023-24310135)
chr1 (369-416)||(24340405-24340452)
chr1 (369-416)||(24352770-24352817)
chr1 (230-281)||(24322308-24322359)
chr1 (22-55)||(24322109-24322142)
chr1 (235-328)||(24365193-24365286)
[»] chr6 (5 HSPs)
chr6 (251-345)||(21015667-21015761)
chr6 (249-345)||(21979770-21979866)
chr6 (369-413)||(21979678-21979722)
chr6 (24-58)||(21980039-21980073)
chr6 (369-414)||(14197703-14197748)
[»] chr3 (4 HSPs)
chr3 (248-344)||(47452028-47452124)
chr3 (248-343)||(11015641-11015736)
chr3 (369-412)||(11005994-11006037)
chr3 (369-412)||(11024569-11024612)
[»] chr8 (6 HSPs)
chr8 (22-119)||(15348509-15348603)
chr8 (248-345)||(15348720-15348817)
chr8 (364-416)||(4031938-4031990)
chr8 (22-56)||(12199954-12199988)
chr8 (22-56)||(12444382-12444416)
chr8 (303-343)||(4032032-4032072)
[»] chr7 (2 HSPs)
chr7 (248-345)||(48883656-48883753)
chr7 (298-341)||(30120435-30120478)
[»] scaffold0508 (1 HSPs)
scaffold0508 (230-283)||(12156-12209)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 48870400 - 48870499
Alignment:
Q  248 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgtgt 347  Q
    ||||||||||||||||||||| |||||||| ||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48870400 aattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgt 48870499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 48886086 - 48886185
Alignment:
Q  248 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgtgt 347  Q
    ||||||||||||||||||||| |||||||| ||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48886086 aattaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgt 48886185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 248 - 341
Target Start/End: Original strand, 48875704 - 48875797
Alignment:
Q  248 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacct 341  Q
    |||||||||||| || ||||| |||||| ||||||||| |  |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48875704 aattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaatacct 48875797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 50251007 - 50250910
Alignment:
Q  248 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    ||||||||||||||||||||| |||||||| || || | |  |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  50251007 aattaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttgt 50250910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 224 - 343
Target Start/End: Complemental strand, 45372310 - 45372191
Alignment:
Q  224 tcccctatcttatttagatcttagaattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccgga 323  Q
    ||||| |||| |||| ||||||  |||||||||||||||||||||||||||||| ||||||  |  ||||| | |||| ||||||||||||||||| ||     
T  45372310 tccccaatctcattttgatcttgaaattaaaggttcatgtagagggtttatatttttgcatggtaattcaaccttctatctatggaatccatccactggt 45372211  T
Q  324 gttcacaaacaaataccttt 343  Q
    ||||| ||||||||||||||    
T  45372210 gttcagaaacaaataccttt 45372191  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 48170789 - 48170700
Alignment:
Q  256 gttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    |||| |||||||| |||||||| ||||||  |  ||||||  ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  48170789 gttcctgtagaggctttatatttttgcatcataattcaagtttctacctatggaatccatccacccgagttcataaacaaatacctttgt 48170700  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 48852316 - 48852401
Alignment:
Q  34 agtcttggttttctcttatctctcactatccccaatttgcaaattcacattctgaaattaaccccgcaacccacactcgtagaatt 119  Q
    |||||||||||||||||||||||||| |||| || ||||||||||| |||| ||||||||   || |||| |||||||||||||||    
T  48852316 agtcttggttttctcttatctctcacaatcctcactttgcaaattcgcattttgaaattactgcctcaacacacactcgtagaatt 48852401  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 420
Target Start/End: Original strand, 48898630 - 48898752
Alignment:
Q  301 acctatggaatccatccaccggagttcacaaacaaatacctttgtgttcca---attcatataaacatttctatggttttgggtatgaccactcaacaaa 397  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | | |   |||  | |  | |||||||||||||||||||||| || | |||| |    
T  48898630 acctatggaatccatccaccggagctcacaaacaaatacctttgtctcctaatcatttttctttatatttctatggttttgggtatgatcagttaacaga 48898729  T
Q  398 tgattacttggtggtttcattgt 420  Q
    ||||||||| ||||||| |||||    
T  48898730 tgattacttagtggttttattgt 48898752  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 48852576 - 48852618
Alignment:
Q  303 ctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48852576 ctatggaatccatccaccggagttcacaaacaaatacctttgt 48852618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 49044410 - 49044316
Alignment:
Q  251 taaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    |||| |||||||||||||||||||||| ||||||  |||| |||     || |||||||||||||||||  ||||||||||||||||||||||||    
T  49044410 taaatgttcatgtagagggtttatatttttgcatcgtgctgcaacaacttatctatggaatccatccactagagttcacaaacaaatacctttgt 49044316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 37827211 - 37827114
Alignment:
Q  248 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    ||||||||||||| ||||||||||| |||| |||||   | ||| || | ||||| |||||||||||||||| ||| |||||||||||||||| ||||    
T  37827211 aattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaatacccttgt 37827114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 48171020 - 48170923
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacattctgaaattaaccccgcaacccacactcgtagaatt 119  Q
    ||||||||||||||||||||||| |||||||||||||  |||| || ||||||||||| |||| | |||||| | ||  ||| |||||||||| ||||    
T  48171020 aatgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaattcgcattttcaaattaccgcctaaacacacactcgtaaaatt 48170923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 345
Target Start/End: Complemental strand, 48705571 - 48705479
Alignment:
Q  255 ggttcatgtagagggtttatattgttgcattctgcttcaagcctct--acctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    |||| ||| ||||| ||||||||||| |||| |||||||| |||||  |||| ||||||||||| || ||| |||||||||||||||||||||    
T  48705571 ggttaatgcagaggttttatattgtttcattgtgcttcaaccctctctacctgtggaatccatctactggatttcacaaacaaatacctttgt 48705479  T

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Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 48735746 - 48735649
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacattctgaaattaaccccgcaacccacactcgtagaatt 119  Q
    ||||||||||||||||||||||||||||||||||     || |  | |||||||||||||||| |||||||| | ||  |||||||||||||||||||    
T  48735746 aatgtgtttgtaagtcttggttttctcttatctcctgtgatactgattttgcaaattcacattttgaaattaccgccataacccacactcgtagaatt 48735649  T

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Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 45384957 - 45384905
Alignment:
Q  364 atttctatggttttgggtatgaccactcaacaaatgattacttggtggtttca 416  Q
    |||||||||||||||||||||| || |||||||||||||| ||||||||||||    
T  45384957 atttctatggttttgggtatgatcagtcaacaaatgattatttggtggtttca 45384905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 345
Target Start/End: Original strand, 48891271 - 48891367
Alignment:
Q  249 attaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    ||||||| |||||||||||||||| || | |||||| ||   |||| | ||||  |||||||||||||||| ||| |||||||||||||||||||||    
T  48891271 attaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctatgtatggaatccatccactggacttcacaaacaaatacctttgt 48891367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 48148116 - 48148049
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacattctgaa 89  Q
    ||||||| |||||||||||||||||||||||||||||  |||| || || ||||||||||||| ||||    
T  48148116 aatgtgtctgtaagtcttggttttctcttatctctcatgatcctcacttcgcaaattcacattttgaa 48148049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 48863126 - 48863181
Alignment:
Q  287 tgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctt 342  Q
    |||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||    
T  48863126 tgcttcaaacatctacctatggaatccatccaccggagctcagaaacaaatacctt 48863181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 48147802 - 48147752
Alignment:
Q  368 ctatggttttgggtatgaccactcaacaaatgattacttggtggtttcatt 418  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  48147802 ctatggttttgggtatgaccagttaacagatgattacttggtggtttcatt 48147752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 48735469 - 48735419
Alignment:
Q  366 ttctatggttttgggtatgaccactcaacaaatgattacttggtggtttca 416  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  48735469 ttctatggttttgggtatgaccatttaacagatgattacttggtggtttca 48735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 48862888 - 48862950
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacatt 84  Q
    |||| ||||| ||||||||||||||||||||||||||  |||| || ||||||||||||||||    
T  48862888 aatgcgtttgcaagtcttggttttctcttatctctcatgatcctcactttgcaaattcacatt 48862950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 7238151 - 7238092
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacatt 84  Q
    ||||||||||||||||||||||||||||||||||| ||   || || ||||||||||||||||    
T  7238151 aatgtgtttgtaagtcttggttttctcttatctctgac---cctcactttgcaaattcacatt 7238092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 48898371 - 48898431
Alignment:
Q  24 tgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacatt 84  Q
    |||||||||||||||||||| || |||||||||||  || |||| ||||||||||||||||    
T  48898371 tgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacatt 48898431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 33133989 - 33133934
Alignment:
Q  290 ttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    ||||||| || ||||||||||||||| |||| ||||||| ||||||||||||||||    
T  33133989 ttcaagcttccacctatggaatccattcacccgagttcataaacaaatacctttgt 33133934  T

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Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 49041569 - 49041475
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacattctgaaattaaccccgcaacccacactcgtagaatt 119  Q
    |||| ||||| ||||||||||||||||||||||||    ||||||| ||||||||||| |||| | || ||| |||| |||||||||  |||||||||    
T  49041569 aatgcgtttgcaagtcttggttttctcttatctct---gatccccattttgcaaattctcatttttaacttacccccccaacccacaaccgtagaatt 49041475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 50250865 - 50250818
Alignment:
Q  369 tatggttttgggtatgaccactcaacaaatgattacttggtggtttca 416  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  50250865 tatggttttggttatgaccactcaacagatgattatttggtggtttca 50250818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 50672412 - 50672451
Alignment:
Q  304 tatggaatccatccaccggagttcacaaacaaataccttt 343  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaataccttt 50672451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 7877727 - 7877777
Alignment:
Q  370 atggttttgggtatgaccactcaacaaatgattacttggtggtttcattgt 420  Q
    |||||||||| |||||||| |||| | ||||||||||||||||||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttcattgt 7877777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 45366647 - 45366533
Alignment:
Q  27 gtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacattctgaaattaaccccgcaacccacactcgtagaattgcactca 126  Q
    |||||||||| ||||||||||||||||||||   || | || |||||||||||||||| | || ||  | ||||||  |||||||||||| ||  | |||    
T  45366647 gtttgtaagtattggttttctcttatctctcgtgattcacactttgcaaattcacattttcaactttccgccgcaaaacacactcgtagagttttattca 45366548  T
Q  127 tatcaaattcagctc 141  Q
    |||||| ||||||||    
T  45366547 tatcaacttcagctc 45366533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 416
Target Start/End: Complemental strand, 49041320 - 49041201
Alignment:
Q  300 tacctatggaatccatccaccggagttcacaaacaaatacctttgtgttccaattcat-ataa---acatttctatggttttgggtatgaccactcaaca 395  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||  | | ||| ||| || |   | |||||||||||||||||||||| |  ||||||    
T  49041320 tacctatggaacccatccaccggagctcacaaactaatacctttgcctcctaat-catgattacttaaatttctatggttttgggtatgatccgtcaaca 49041222  T
Q  396 aatgattacttggtggtttca 416  Q
     ||||||||||| ||||||||    
T  49041221 gatgattacttgatggtttca 49041201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 45372488 - 45372420
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacattctgaaatta 93  Q
    |||||||||||||||||||||||||| ||||||||    |||| || |||||||||||||||| | ||||||    
T  45372488 aatgtgtttgtaagtcttggttttctattatctct---gatcctcattttgcaaattcacattttcaaatta 45372420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 47207762 - 47207847
Alignment:
Q  256 gttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacct 341  Q
    ||||||||||||| |||||||| ||||||     |||||||  ||||||||||||||||||||| |||||| | | ||||||||||    
T  47207762 gttcatgtagaggctttatatttttgcatcgactttcaagctactacctatggaatccatccactggagttgagagacaaatacct 47207847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 7908325 - 7908373
Alignment:
Q  372 ggttttgggtatgaccactcaacaaatgattacttggtggtttcattgt 420  Q
    |||||||| |||||||| |||| | ||||||||||||||||||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgt 7908373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 48902924 - 48902972
Alignment:
Q  364 atttctatggttttgggtatgaccactcaacaaatgattacttggtggt 412  Q
    |||| ||||||||||||||||||||||||| | ||||||||||| ||||    
T  48902924 atttttatggttttgggtatgaccactcaagagatgattacttgatggt 48902972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 345
Target Start/End: Original strand, 50668911 - 50669007
Alignment:
Q  249 attaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    |||| |||||| |||||||| |||||||| ||||||| | |||| | | ||| | ||||||||||||||||| || |||| ||||| ||||| ||||    
T  50668911 attagaggttcgtgtagaggctttatatttttgcattgttcttccaacatctgcatatggaatccatccaccagatttcataaacagataccattgt 50669007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 33134257 - 33134142
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacattctgaaattaaccccgcaacccacactcgtagaattgc 121  Q
    |||| ||||||||| |||| ||||||||||||||| |  |||| || |||||||||||||||| | |||| | | || |||| |||||| ||| |||||     
T  33134257 aatgcgtttgtaagccttgattttctcttatctctaatgatcctcactttgcaaattcacattttcaaataaccgcctcaacacacactagtaaaattgt 33134158  T
Q  122 actcatatcaaattca 137  Q
      ||||| ||||||||    
T  33134157 gttcataacaaattca 33134142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 7771051 - 7771085
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctct 56  Q
    |||| ||||||||||||||||||||||||||||||    
T  7771051 aatgcgtttgtaagtcttggttttctcttatctct 7771085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 48902597 - 48902627
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttat 52  Q
    |||||||||||||||||||||||||||||||    
T  48902597 aatgtgtttgtaagtcttggttttctcttat 48902627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 49048749 - 49048704
Alignment:
Q  300 tacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||||||    
T  49048749 tacctttggaatccatccactagagttcacagacaaatacctttgt 49048704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 7774260 - 7774201
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacatt 84  Q
    ||||||||||||||   ||||||||||||||||||    ||||||| ||||||||||||||||    
T  7774260 aatgtgtttgtaagctatggttttctcttatctct---gatccccattttgcaaattcacatt 7774201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 7822618 - 7822673
Alignment:
Q  24 tgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcaca 82  Q
    ||||||||||| || ||||||||||||||||||    ||||||| ||||||||||||||    
T  7822618 tgtgtttgtaaatcatggttttctcttatctct---gatccccactttgcaaattcaca 7822673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 7904679 - 7904738
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacatt 84  Q
    |||||||||||||||  ||||||||||||||||||    |||| || ||||||||||||||||    
T  7904679 aatgtgtttgtaagttatggttttctcttatctct---gatcctcactttgcaaattcacatt 7904738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 48156853 - 48156825
Alignment:
Q  27 gtttgtaagtcttggttttctcttatctc 55  Q
    |||||||||||||||||||||||||||||    
T  48156853 gtttgtaagtcttggttttctcttatctc 48156825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 48705448 - 48705396
Alignment:
Q  364 atttctatggttttgggtatgaccactcaacaaatgattacttggtggtttca 416  Q
    ||||| |||||||||| ||||| || |||||| ||||||||||||| ||||||    
T  48705448 atttccatggttttggatatgatcagtcaacagatgattacttggttgtttca 48705396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 48870189 - 48870248
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacatt 84  Q
    |||| ||||||||||||||||||| |||||||||   | ||||||  ||||||||||||||||    
T  48870189 aatgcgtttgtaagtcttggttttttcttatctc---cgatcccctttttgcaaattcacatt 48870248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 48885875 - 48885934
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacatt 84  Q
    |||| ||||||||||||||||||| |||||||||   | ||||||  ||||||||||||||||    
T  48885875 aatgcgtttgtaagtcttggttttttcttatctc---cgatcccctttttgcaaattcacatt 48885934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 49048657 - 49048613
Alignment:
Q  369 tatggttttgggtatgaccactcaacaaatgattacttggtggtt 413  Q
    |||||||||||||||||||  |||||| ||||||| |||||||||    
T  49048657 tatggttttgggtatgacccatcaacagatgattatttggtggtt 49048613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 50669052 - 50669112
Alignment:
Q  369 tatggttttgggtatgaccactcaacaaatgattacttggtggtttcattgtgcaatgatc 429  Q
    ||||||||||| |||||||  |||| | ||||||||||||| |||||||||| | ||||||    
T  50669052 tatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatc 50669112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 230 - 451
Target Start/End: Complemental strand, 42562566 - 42562342
Alignment:
Q  230 atcttatttagatcttagaattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcac 329  Q
    ||||||||| ||| || ||||||||||||| ||||||||||||||| | ||||||| || | || || ||||||||||||||||||||| ||||  ||||    
T  42562566 atcttatttcgatattggaattaaaggttcgtgtagagggtttatacttttgcattgtggtgcatgcttctacctatggaatccatccatcggacatcac 42562467  T
Q  330 aaacaaatacctttgtgttccaattca-tata---aacatttctatggttttgggtatgaccactcaacaaatgattacttggtggtttcattgtgcaat 425  Q
    ||||||||||||||||  ||| ||| | ||||      |||| ||||||||||||||||| ||||||||||||||||| || ||||||||| | | |  |    
T  42562466 aaacaaatacctttgt-ctcctattgattatatttttaatttatatggttttgggtatgatcactcaacaaatgattatttagtggtttcaatttcccgt 42562368  T
Q  426 gatcgaattccaaactcagatgatgt 451  Q
    |||| ||||||| |||||||||||||    
T  42562367 gatcaaattccatactcagatgatgt 42562342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 29688011 - 29688061
Alignment:
Q  290 ttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacc 340  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||||||    
T  29688011 ttcaagcctttatctatggaatccatccaccggagttcacagacaaatacc 29688061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 29696198 - 29696250
Alignment:
Q  364 atttctatggttttgggtatgaccactcaacaaatgattacttggtggtttca 416  Q
    ||||||||||||||||||||||| | |||||| |||||||||||||| |||||    
T  29696198 atttctatggttttgggtatgacgagtcaacagatgattacttggtgatttca 29696250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 29712682 - 29712599
Alignment:
Q  249 attaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaa 332  Q
    ||||||||||| ||||||||||||||| | |||  || || |||| | ||||  ||||||||||||||||| ||||||||||||    
T  29712682 attaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaa 29712599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 29696072 - 29696165
Alignment:
Q  250 ttaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaataccttt 343  Q
    |||||||||| |||||||| |||||| | ||| | | |   ||||||||||   |||||||||||||||||||| ||||||||| |||||||||    
T  29696072 ttaaaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcacaaacgaataccttt 29696165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 29261158 - 29261201
Alignment:
Q  298 tctacctatggaatccatccaccggagttcacaaacaaatacct 341  Q
    |||| |||||||||||||| |||||||| |||||||||||||||    
T  29261158 tctatctatggaatccatcaaccggagtccacaaacaaatacct 29261201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 42562762 - 42562705
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattc 79  Q
    |||| ||||||||||||||||||||||| ||||||||  || || | |||||||||||    
T  42562762 aatgcgtttgtaagtcttggttttctctaatctctcataataccgagtttgcaaattc 42562705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 179026 - 179074
Alignment:
Q  364 atttctatggttttgggtatgaccactcaacaaatgattacttggtggt 412  Q
    ||||||||||||||||||||||  | |||||| ||||||||||| ||||    
T  179026 atttctatggttttgggtatgaggagtcaacagatgattacttgttggt 179074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 253 - 415
Target Start/End: Original strand, 24367025 - 24367190
Alignment:
Q  253 aaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgtgttcca- 351  Q
    ||||||||||| ||||||||||||||||||| ||| |||||| | | ||||||||||| ||||||||| ||||||| |  ||| ||||||||  |   |     
T  24367025 aaggttcatgtcgagggtttatattgttgcactcttcttcaaacatttacctatggaacccatccaccagagttcataggcaattacctttgcctcttaa 24367124  T
Q  352 --attcatataaacatttctatggttttgggtatgaccactcaacaaatgattacttggtggtttc 415  Q
      ||| ||||  | ||||||||||||||||||||||| | |||||| |||||||||||||||||||    
T  24367125 tcatttatatgcagatttctatggttttgggtatgacaagtcaacagatgattacttggtggtttc 24367190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 342
Target Start/End: Original strand, 24310023 - 24310135
Alignment:
Q  230 atcttatttagatcttagaattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcac 329  Q
    |||| |||| ||||||| | ||| ||||||||||||||| |||||||||||| | | |  ||||| | | ||| |||||||||||||||||||||||||     
T  24310023 atctcattttgatcttaaagttataggttcatgtagaggttttatattgttggagtgtttttcaaacatttacgtatggaatccatccaccggagttcat 24310122  T
Q  330 aaacaaatacctt 342  Q
    | |||||||||||    
T  24310123 agacaaatacctt 24310135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 24340405 - 24340452
Alignment:
Q  369 tatggttttgggtatgaccactcaacaaatgattacttggtggtttca 416  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||||    
T  24340405 tatggttttgggtatgacgaatcaacatatgattacttggtggtttca 24340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 24352770 - 24352817
Alignment:
Q  369 tatggttttgggtatgaccactcaacaaatgattacttggtggtttca 416  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||||    
T  24352770 tatggttttgggtatgacgaatcaacatatgattacttggtggtttca 24352817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 24322308 - 24322359
Alignment:
Q  230 atcttatttagatcttagaattaaaggttcatgtagagggtttatattgttg 281  Q
    ||||||||| ||||||| | ||| ||||||||||||||||| ||||||||||    
T  24322308 atcttattttgatcttaaagttagaggttcatgtagagggtatatattgttg 24322359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 24322109 - 24322142
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctc 55  Q
    |||| |||||||||||||||||||||||||||||    
T  24322109 aatgcgtttgtaagtcttggttttctcttatctc 24322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 328
Target Start/End: Original strand, 24365193 - 24365286
Alignment:
Q  235 atttagatcttagaattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttca 328  Q
    |||| ||||||| ||||| |||||||||||||||||| ||||| ||| | |||  | ||| | | || ||||||||||||||||  ||||||||    
T  24365193 attttgatcttaaaattataggttcatgtagagggttcatatttttgtactcttatccaaacttttagctatggaatccatccaatggagttca 24365286  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 21015667 - 21015761
Alignment:
Q  251 taaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    |||| |||||||||||||||||||||| |||||   || ||||| | ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  21015667 taaatgttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgt 21015761  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 345
Target Start/End: Complemental strand, 21979866 - 21979770
Alignment:
Q  249 attaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    |||||||||||||||||||| |||||||| || || | |  |||||| |||||| ||||||| || || || ||| |||| ||||||||||||||||    
T  21979866 attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgt 21979770  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 21979722 - 21979678
Alignment:
Q  369 tatggttttgggtatgaccactcaacaaatgattacttggtggtt 413  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||    
T  21979722 tatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 21980073 - 21980039
Alignment:
Q  24 tgtgtttgtaagtcttggttttctcttatctctca 58  Q
    |||||||||||||||||||||||||| ||||||||    
T  21980073 tgtgtttgtaagtcttggttttctctcatctctca 21980039  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 414
Target Start/End: Complemental strand, 14197748 - 14197703
Alignment:
Q  369 tatggttttgggtatgaccactcaacaaatgattacttggtggttt 414  Q
    ||||| |||||||||||||  ||||| |||||||||||||||||||    
T  14197748 tatggctttgggtatgacctgtcaaccaatgattacttggtggttt 14197703  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 344
Target Start/End: Complemental strand, 47452124 - 47452028
Alignment:
Q  248 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttg 344  Q
    |||||||||||||||||||||||||||| | ||   || | |||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  47452124 aattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctttg 47452028  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 343
Target Start/End: Complemental strand, 11015736 - 11015641
Alignment:
Q  248 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaataccttt 343  Q
    ||||||| ||||||||||||| |||||| | |||  || | |||||| | ||||||||||||||||||| || |||  ||||||||||||||||||    
T  11015736 aattaaaagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatcaactggacatcacaaacaaataccttt 11015641  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 11006037 - 11005994
Alignment:
Q  369 tatggttttgggtatgaccactcaacaaatgattacttggtggt 412  Q
    |||||||||||||||||||| |||| | ||||||||||||||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggt 11005994  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 11024612 - 11024569
Alignment:
Q  369 tatggttttgggtatgaccactcaacaaatgattacttggtggt 412  Q
    |||||||||||||||||||| |||| | ||||||||||||||||    
T  11024612 tatggttttgggtatgaccattcaagagatgattacttggtggt 11024569  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 15348509 - 15348603
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctctcactatccccaatttgcaaattcacattctgaaattaaccccgcaacccacactcgtagaatt 119  Q
    |||| ||||||||||||||||||||||||||||||    ||||  | || ||||||||||||| | |||||| | ||||||| |||||||||||||||    
T  15348509 aatgcgtttgtaagtcttggttttctcttatctct---gatccttacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaatt 15348603  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 15348720 - 15348817
Alignment:
Q  248 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    ||||||||||||||||||||| ||| || | ||| | | |  ||||| |||||| ||||||||||||||||||||| |||||| | || |||||||||    
T  15348720 aattaaaggttcatgtagaggctttgtacttttgaactattattcaatcctctatctatggaatccatccaccggatttcacagaaaagtacctttgt 15348817  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 4031990 - 4031938
Alignment:
Q  364 atttctatggttttgggtatgaccactcaacaaatgattacttggtggtttca 416  Q
    |||| |||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  4031990 atttatatggttttgggtatgaccagtcaacaaatgactacctggtggtttca 4031938  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 12199954 - 12199988
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctct 56  Q
    |||||||||||||||| ||||||||||||||||||    
T  12199954 aatgtgtttgtaagtcatggttttctcttatctct 12199988  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 12444382 - 12444416
Alignment:
Q  22 aatgtgtttgtaagtcttggttttctcttatctct 56  Q
    |||||||||||||||| ||||||||||||||||||    
T  12444382 aatgtgtttgtaagtcatggttttctcttatctct 12444416  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 4032072 - 4032032
Alignment:
Q  303 ctatggaatccatccaccggagttcacaaacaaataccttt 343  Q
    ||||||||| ||||||  |||||||||||||||||||||||    
T  4032072 ctatggaattcatccattggagttcacaaacaaataccttt 4032032  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 48883656 - 48883753
Alignment:
Q  248 aattaaaggttcatgtagagggtttatattgttgcattctgcttcaagcctctacctatggaatccatccaccggagttcacaaacaaatacctttgt 345  Q
    |||||||||||| |||||||||||| | || ||||||  | |||| | | ||| | |||||||||||| ||| ||| |||||||||||||||||||||    
T  48883656 aattaaaggttcgtgtagagggtttctgtttttgcatggttcttccaacatctgcatatggaatccatacactggatttcacaaacaaatacctttgt 48883753  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 30120478 - 30120435
Alignment:
Q  298 tctacctatggaatccatccaccggagttcacaaacaaatacct 341  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  30120478 tctatctatggaatccatccaccggagtccacaaacaaatacct 30120435  T

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Target: scaffold0508 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 12156 - 12209
Alignment:
Q  230 atcttatttagatcttagaattaaaggttcatgtagagggtttatattgttgca 283  Q
    |||| |||| ||||||  ||||||||||||||||||| |||||||||| |||||    
T  12156 atctcattttgatcttcaaattaaaggttcatgtagaaggtttatatttttgca 12209  T

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