View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15729_low_3 (Length: 444)
Name: NF15729_low_3
Description: NF15729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15729_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 158 - 427
Target Start/End: Complemental strand, 32855953 - 32855684
Alignment:
| Q |
158 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
257 |
Q |
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| T |
32855953 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
32855854 |
T |
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| Q |
258 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttaattgatgtg |
357 |
Q |
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| T |
32855853 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttgattgatgtg |
32855754 |
T |
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| Q |
358 |
agcttttaaactttataatacagtctcaaagcaaatcacaattcaacaccagacacgccccggattccac |
427 |
Q |
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| T |
32855753 |
agcttttaaactttataatacagtctcaaaacaaatcacaattcaacaccagacacgccccggattccac |
32855684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 223 - 408
Target Start/End: Complemental strand, 32850489 - 32850285
Alignment:
| Q |
223 |
ttgttgcatttagtaacctttggccaccccaacaggtagcacttgatattttcagctggaaaggacctga--------------gtatcagaatgactaa |
308 |
Q |
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| T |
32850489 |
ttgttgcacttagtaacttttagcaaccccaacaggtagcagttggtattttcagctggaaaggacctgataatccctaaagttgtatcagcatgactaa |
32850390 |
T |
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| Q |
309 |
tgatgatttgagcatgtagag--------cagggtaactcttctcttaattgatgtgagcttttaaactttataatacagtctcaaagcaaatcacaatt |
400 |
Q |
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| T |
32850389 |
tgat---ttgagcatgtagaggcgtagagcagggtaactcttctctcaattgatgtgagcttttaaactttataatacagtctcaaaacaaatcacaatt |
32850293 |
T |
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| Q |
401 |
caacacca |
408 |
Q |
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| T |
32850292 |
caacacca |
32850285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 32856110 - 32855987
Alignment:
| Q |
1 |
ttccaaagagagatgatttattgggtgatggtagtagccacagagtgcagaacagttacagtgctttgaagatannnnnnnnnnnnnnnncttccagctg |
100 |
Q |
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| T |
32856110 |
ttccaaagagagatgatttattgggtgacggtagtagccacagagtgcagaacagttacagtgctttgaagatattttctttttgtttttcttccagctg |
32856011 |
T |
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| Q |
101 |
gagatattatcttagttcaaaggg |
124 |
Q |
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| T |
32856010 |
gagatattatcttagttcaaaggg |
32855987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 32850561 - 32850520
Alignment:
| Q |
159 |
gggaaaaataaaactacaagcgtgggagatgtggtcttgcac |
200 |
Q |
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| T |
32850561 |
gggaaaaataaaactacaatcgtgggagatggggtcttgcac |
32850520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 32850625 - 32850592
Alignment:
| Q |
91 |
cttccagctggagatattatcttagttcaaaggg |
124 |
Q |
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| T |
32850625 |
cttccagctggagatattatcttagttcaaaggg |
32850592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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