View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15729_low_8 (Length: 315)
Name: NF15729_low_8
Description: NF15729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15729_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 48133351 - 48133628
Alignment:
| Q |
4 |
gcactattgatagtataggcctagtaaataacataattcgaaactttttcaatcagaaattaaaa--ctacatctatgttgaattacataagattaaatt |
101 |
Q |
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| T |
48133351 |
gcactattgatagtataggcctagtaaacaacataattcaaacctttttcaatcagaaattaaaaaactacatccatgttgaattacataagattaaatt |
48133450 |
T |
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| Q |
102 |
ggaattcaattaagttttcttgtatgcaattatgaatcaatatgcaacatataactagggaacatgtatatgtacctggacattggtgcagtctataagt |
201 |
Q |
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| T |
48133451 |
ggaattcaattaagttttcttgtatg------------------caacatataactagtgaacatgtatatgtacctggacattggtgcagtctataagt |
48133532 |
T |
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| Q |
202 |
ttttcaagttcttccaatctaagaacatcatgataaacataacgacgaacttgaagaaggcggtggtagcgatgagatggaaagcaatgaggacaa |
297 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48133533 |
ttctcaagttcttccaatctaagaacatcatgataaacataacgacgaacttgaagaaggcggtggtagcgatgagatggaaagcaatgaggacaa |
48133628 |
T |
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