View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1572_high_4 (Length: 250)
Name: NF1572_high_4
Description: NF1572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1572_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 7153395 - 7153644
Alignment:
| Q |
1 |
tgtagaattagtaataagcagagatttatgacttatattgactctagt----acaatacaaccaaacacaaagcaaccatatagctctcataacaccttc |
96 |
Q |
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| T |
7153395 |
tgtagagttagtaataagcagagatttatgacttatattgactatagtttatacaatacaaccaaacacaaagcaaccatatagctctcataacaccttc |
7153494 |
T |
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| Q |
97 |
aacaaa----atctaacatttcaattttctgaagatgagatctatgaccactttatattattctaattaaaaagcaaacacacatgtttcttatacatta |
192 |
Q |
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| T |
7153495 |
aacaaattaaatctaacatttcaattttctgaagatgagatctatgaccactttatattattctaattaaaaagcaaacacacatgtttcttatacatta |
7153594 |
T |
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| Q |
193 |
aatgtgtactcatacacacaaatacacacattggttccagtatctctgct |
242 |
Q |
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| T |
7153595 |
aatgtgtactcatacacacaaatacacacattggttccagtatctctgct |
7153644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 231
Target Start/End: Original strand, 7159548 - 7159729
Alignment:
| Q |
48 |
tacaatacaaccaaacacaaagcaaccatatagctctcataacaccttcaacaaaatct---aacatttcaattttctgaagatgagatctatgaccact |
144 |
Q |
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| T |
7159548 |
tacaagacaaccaaacacaaagcgatcata--gctctcataacaccttcaacaaaatctaagaacatttgaatttgatgaaggttagatccatgaccacc |
7159645 |
T |
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| Q |
145 |
ttatattattctaattaaaaagcaaacacacatgtttcttatacattaaatgtgtact--catacacacaaatacacacattggttcca |
231 |
Q |
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| T |
7159646 |
tcatattattcta---aaaaaggaa--acacatgcttcttatatattaaatgtgtactaatatacacacaattacacatattggttcca |
7159729 |
T |
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