View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1572_high_8 (Length: 227)
Name: NF1572_high_8
Description: NF1572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1572_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 19337852 - 19337649
Alignment:
| Q |
9 |
caaaggcaataaaagcggggctttgctcaggccataaaactttgatctaaaactgtacttaatcatagttttaattatttattatacatttacacttgag |
108 |
Q |
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| T |
19337852 |
caaaggcaataaaagcggggctttgctcaggccataaaactttgatctaaaactgtacttaatcatagttttaattatttattatacatttacacttgag |
19337753 |
T |
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| Q |
109 |
agtttaggcttcaaaatgtttttccacgttgttattgttgagtttgactcaaaatttgatgtttgtgttctgtattgttccactcaaattattacgagat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19337752 |
agtttaggcttcaaaatgtttttccacgttgttattgttgagtttgactcaaaatttgatgtttgtgttctgtattgttccactcaaattattacgagat |
19337653 |
T |
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| Q |
209 |
atat |
212 |
Q |
| |
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|||| |
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| T |
19337652 |
atat |
19337649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 19428248 - 19428137
Alignment:
| Q |
75 |
agttttaattatttattatacatttacacttgagagtttaggcttcaaaatgtttttccacgttgttattgttgagtttgactcaaaatttgatgtttgt |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19428248 |
agttttaattatttattatacatttacacttgagagtttaggcttcaaaatgtttttccacattgttattgttgagtttgactcaaaatttgatgtttgt |
19428149 |
T |
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| Q |
175 |
gttctgtattgt |
186 |
Q |
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|||||||||||| |
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| T |
19428148 |
gttctgtattgt |
19428137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 39126965 - 39126998
Alignment:
| Q |
144 |
tgttgagtttgactcaaaatttgatgtttgtgtt |
177 |
Q |
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| T |
39126965 |
tgttgagtttgactcaaaatttgatgttcgtgtt |
39126998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 25723938 - 25723903
Alignment:
| Q |
142 |
attgttgagtttgactcaaaatttgatgtttgtgtt |
177 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
25723938 |
attgttgagattgactcaaaatttgatgtttgtgtt |
25723903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 35371086 - 35371051
Alignment:
| Q |
142 |
attgttgagtttgactcaaaatttgatgtttgtgtt |
177 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
35371086 |
attgttgagttagactcaaaatttgatgtttgtgtt |
35371051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 22066561 - 22066597
Alignment:
| Q |
142 |
attgttgagttt-gactcaaaatttgatgtttgtgtt |
177 |
Q |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
22066561 |
attgttgagttttgactcaaaatttgatgtttgtgtt |
22066597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 917320 - 917356
Alignment:
| Q |
141 |
tattgttgagtttgactcaaaatttgatgtttgtgtt |
177 |
Q |
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||||||||||||||||| |||||||||||||| |||| |
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| T |
917320 |
tattgttgagtttgacttaaaatttgatgtttatgtt |
917356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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