View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1572_low_1 (Length: 392)

Name: NF1572_low_1
Description: NF1572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1572_low_1
NF1572_low_1
[»] chr4 (1 HSPs)
chr4 (46-376)||(49216683-49217000)
[»] chr5 (2 HSPs)
chr5 (14-47)||(13664640-13664673)
chr5 (14-50)||(3362773-3362809)
[»] chr3 (4 HSPs)
chr3 (14-47)||(22426378-22426411)
chr3 (14-54)||(11347259-11347299)
chr3 (14-46)||(24343546-24343578)
chr3 (14-46)||(33839530-33839562)
[»] chr8 (1 HSPs)
chr8 (14-46)||(26042150-26042182)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 46 - 376
Target Start/End: Original strand, 49216683 - 49217000
Alignment:
Q  46 tatatgaaattgagaaatgattggggaacacaaaaattgacattggacaccgtattcctatacggttgagatacaatttggagttttgaatattttaagg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  49216683 tatatgaaattgagaaatgattggggaacacaaaaattgacattggacaccgtattcctatacggttgagatacaatttggagttttga----------- 49216771  T
Q  146 taggattcgttttccgtgtacatatgttatacggtgtgtattcattgttaatactgtttgtttgtgttctaatatcatcatttctaaagtggagttacat 245  Q
      |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49216772 --ggattcgttttcagtgtacatatgttatacggtgtgtatacattgttaatactgtttgtttgtgttctaatataatcatttctaaagtggagttacat 49216869  T
Q  246 agtataaagaaggcatgattatgccttattgattgattgctttacaatcttctccgatgaggatagaaaacgttgaagtattaaggacagctacnnnnnn 345  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||          
T  49216870 agtataaagaaggcatgattatgccgtattgattgattgctttacaatcttctccgatgaggatagaaaaagttgaagtattaaggacagctacaaaaaa 49216969  T
Q  346 ncaaggttggtaagataattgagcttaaact 376  Q
     ||||||||||||||||||||| ||||||||    
T  49216970 acaaggttggtaagataattgaccttaaact 49217000  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 13664673 - 13664640
Alignment:
Q  14 gataaaatctttcttaatatataccattgctcta 47  Q
    ||||||||||||||||||||||| ||||||||||    
T  13664673 gataaaatctttcttaatatataacattgctcta 13664640  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 3362809 - 3362773
Alignment:
Q  14 gataaaatctttcttaatatataccattgctctatat 50  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  3362809 gataaaatctttcttgatatatagcattgctctatat 3362773  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 22426378 - 22426411
Alignment:
Q  14 gataaaatctttcttaatatataccattgctcta 47  Q
    ||||||||||||||||||||||| ||||||||||    
T  22426378 gataaaatctttcttaatatataacattgctcta 22426411  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 11347299 - 11347259
Alignment:
Q  14 gataaaatctttcttaatatataccattgctctatatgaaa 54  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  11347299 gataaaatctttcttgatatatagcattgctctttatgaaa 11347259  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 24343578 - 24343546
Alignment:
Q  14 gataaaatctttcttaatatataccattgctct 46  Q
    ||||||||||||||||||||||| |||||||||    
T  24343578 gataaaatctttcttaatatatagcattgctct 24343546  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 33839562 - 33839530
Alignment:
Q  14 gataaaatctttcttaatatataccattgctct 46  Q
    ||||||||||||||||||||||| |||||||||    
T  33839562 gataaaatctttcttaatatataacattgctct 33839530  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 26042150 - 26042182
Alignment:
Q  14 gataaaatctttcttaatatataccattgctct 46  Q
    ||||||||||||||||||||||| |||||||||    
T  26042150 gataaaatctttcttaatatatagcattgctct 26042182  T

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