View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1573-INSERTION-3 (Length: 383)
Name: NF1573-INSERTION-3
Description: NF1573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1573-INSERTION-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 1443034 - 1442723
Alignment:
| Q |
8 |
ctattgtctactcagtgtacaatagtcaaaatcctggacaagtatctatcattcctacaacttttgacacaacattggaatctgtagaaaagctgaaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1443034 |
ctattgtctactcagtgtacaatagtcaaaatcctggacaagtatctatcattcctacaacttttgacacaacattggaatctgtagaaaagctgaaaaa |
1442935 |
T |
|
| Q |
108 |
gaaaattatctcactttctgcttctcaagttcatggtgatattttcagttcaacctcttagccattcatattattgctgcattttgacttctttaatatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||||||| | |||| |
|
|
| T |
1442934 |
gaaaattatctcactttctgcttctcaagttcatggtgatgttatcagttcaacctcttagccattcataatattgctgccttttgacttcttaagtatt |
1442835 |
T |
|
| Q |
208 |
ggt--tctaattcatgtcaattcttacagcgaataaacgaatatagttttgattttgtttggttattgagatggtccaag-tacattctgtattatttat |
304 |
Q |
| |
|
||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1442834 |
ggttctctaattcaagtcaattcttacagtgaataaacgaatatagttttgattttgtttggttattgagatggtccaagttacattctgtattatttat |
1442735 |
T |
|
| Q |
305 |
taagctaactag |
316 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1442734 |
taagctaactag |
1442723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 1442311 - 1442263
Alignment:
| Q |
335 |
cattgtcaatgtttatacaacaatgcttgggaataatgttaattcttaa |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1442311 |
cattgtcaatgtttatacaacaatgcttgggaataatgttatttcttaa |
1442263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 1442703 - 1442658
Alignment:
| Q |
338 |
tgtcaatgtttatacaacaatgcttgggaataatgttaattcttaa |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1442703 |
tgtcaatgtttatacaacaatgcttgggaataatgttatttcttaa |
1442658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University