View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15730_low_4 (Length: 228)
Name: NF15730_low_4
Description: NF15730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15730_low_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 38143185 - 38142958
Alignment:
| Q |
1 |
ttctacatttttcttctaagattataaattggactacgtacactgagtgtgagctacacacattttgattattgtgatattgtgattcagaattaagtca |
100 |
Q |
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| T |
38143185 |
ttctacatttttcttcaaagattataaattggactacgtacactgggtgtgagctacacacattttgattattgtgatattgtgattcaaaattaagtca |
38143086 |
T |
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| Q |
101 |
tgggattcaaaattttactattgacgtatttcatagtgtcgttggttatttttcaacatgggaattgccaaagagttaacgttggtggcggtttcgttca |
200 |
Q |
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| T |
38143085 |
tggggttccaaattttactattgacgtatttcatagtgtcgttggttatttttcaacatgggaattgccaaagagttaacgttggtggcggtttcgttca |
38142986 |
T |
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| Q |
201 |
aagaaaaggtactcattttgttctgaat |
228 |
Q |
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| T |
38142985 |
aagaaaaggtactcattttattctgaat |
38142958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 38156491 - 38156281
Alignment:
| Q |
1 |
ttctacatttttcttctaagattataaattggactacgtacactgagtgtgagctacacacattttgattattgtgatattgtgattcagaattaagtca |
100 |
Q |
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| T |
38156491 |
ttctacatttttcttcaaagattataaattggattacttacactgtgtgtgagctacacacattttgattattgtgat--------tcaaaattaagtca |
38156400 |
T |
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| Q |
101 |
tgggattcaaaattttactattgacgtatttcatagtgtcgttggttatttttcaacatgggaattgccaaagagttaacgttggtggcggtttcgttca |
200 |
Q |
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| T |
38156399 |
tggggttccaaattttactattgatgtatttcctagtgtcgctggttattgttcaacatggcaacggccaaagagttaacgttggtgccggtttcgttca |
38156300 |
T |
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| Q |
201 |
aagaaaaggtactcatttt |
219 |
Q |
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| T |
38156299 |
aagaaaaggcactcatttt |
38156281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 38112063 - 38111977
Alignment:
| Q |
142 |
ttggttatttttcaacatgggaattgccaaagagttaacgttggtggcggtttcgttcaaagaaaaggtactcattttgttctgaat |
228 |
Q |
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| T |
38112063 |
ttggttatttttcaacatgggaacagcaaaagagttaacgttggtggcggtttcgttcaaagaaaaggtactcattttattctgaat |
38111977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 38091813 - 38091756
Alignment:
| Q |
152 |
ttcaacatgggaattgccaaagagttaacgttggtggcggtttcgttcaaagaaaagg |
209 |
Q |
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| T |
38091813 |
ttcaacatgggaacacccaaaaagttaacgttggtgttggtttcgttcaaagaaaagg |
38091756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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