View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15730_low_5 (Length: 226)
Name: NF15730_low_5
Description: NF15730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15730_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 38142981 - 38142790
Alignment:
| Q |
16 |
aaaggtactcattttgttctgaatggaaagacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacccatctacaagggtca |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38142981 |
aaaggtactcattttattctgaatggaaagacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacccatctacaagggtca |
38142882 |
T |
|
| Q |
116 |
aggtcacgtctaattttcaacaagcttctcaacatggtttaaatgtaggaagaacattggctttcaacgatggagattataaacctcttcag |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38142881 |
aggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtgggaagaacattggctttcaacgatggagattataaacctcttcag |
38142790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 56 - 206
Target Start/End: Complemental strand, 38156255 - 38156105
Alignment:
| Q |
56 |
tgaatggattcaattcctactggttgatgacaatggcatctgacccatctacaagggtcaaggtcacgtctaattttcaacaagcttctcaacatggttt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38156255 |
tgaatggattcaattcctactggttgatgacaatggcatctgacccatctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggttt |
38156156 |
T |
|
| Q |
156 |
aaatgtaggaagaacattggctttcaacgatggagattataaacctcttca |
206 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
38156155 |
aaatgtgggaagaacatgggctttcaacgatggagattctaaacctcttca |
38156105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 38112000 - 38111809
Alignment:
| Q |
16 |
aaaggtactcattttgttctgaatggaaagacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacccatctacaagggtca |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| | |
|
|
| T |
38112000 |
aaaggtactcattttattctgaatggaaagacacactatgtgaatggattcaattcctattggttaatgatcatggcatctgacccatctacaagttcta |
38111901 |
T |
|
| Q |
116 |
aggtcacgtctaattttcaacaagcttctcaacatggtttaaatgtaggaagaacattggctttcaacgatggagattataaacctcttcag |
207 |
Q |
| |
|
||||||| || ||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
38111900 |
aggtcacttcaaatttccaacaagcttctcgacatggtttaaatgtaggaagaacatgggcttgcaacgatggaggttataaagctcttcag |
38111809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 38086180 - 38085990
Alignment:
| Q |
16 |
aaaggtactcattttgttctgaatggaaagacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacccatctacaagggtca |
115 |
Q |
| |
|
||||| || |||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||| | || ||||||||||| ||||||||||| | |
|
|
| T |
38086180 |
aaaggaacacattttattctcaatgggaagacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatccatctacaagttcta |
38086081 |
T |
|
| Q |
116 |
aggtcacgtctaattttcaacaagcttctcaacatggtttaaatgtaggaagaacattggctttcaacgatggagattataaacctcttca |
206 |
Q |
| |
|
||||||| || | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
38086080 |
aggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggttataaagctcttca |
38085990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 38091751 - 38091586
Alignment:
| Q |
25 |
cattttgttctgaatggaaagacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacccatctacaagggtcaaggtcacgt |
124 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||| ||| || || | |
|
|
| T |
38091751 |
cattttcttatgaatgggaagacacactatgtgaatggattcaattcccactggttgatgattatggcagctgacctatctacaagacccaaagttacat |
38091652 |
T |
|
| Q |
125 |
ctaattttcaacaagcttctcaacatggtttaaatgtaggaagaacattggctttcaacgatggag |
190 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
38091651 |
ctgcatttcaacaagcttcacaacatggtttaaatgtaggaagaacatgggctttcaatgatggag |
38091586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University