View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15731_high_11 (Length: 274)
Name: NF15731_high_11
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15731_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 13370551 - 13370454
Alignment:
| Q |
18 |
gtaataaaacctgaagtgccataaggaagtctgtctgcaaatgcaaatgccggtcgagaagagaacgcgaggtcatttgttttgaatatagaggcagc |
115 |
Q |
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| T |
13370551 |
gtaataaaacctgaagtgccataaggaagtctgtctgcaaatgtaaatgccggtcgagaagagaacgcgaggtcatttgttttgaatatagaggcagc |
13370454 |
T |
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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 13370388 - 13370308
Alignment:
| Q |
181 |
cgtgttttgaggagatggattggaaggatttgtagagagatggagtgaggaggtggaggtggcctattagagggagtgatg |
261 |
Q |
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| T |
13370388 |
cgtgttttgaggagatggattggaaggatttgtagagagatggagtgaggaggtggaggtggcctattagagggagtgatg |
13370308 |
T |
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