View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15731_high_12 (Length: 254)
Name: NF15731_high_12
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15731_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 21046356 - 21046152
Alignment:
| Q |
9 |
attattctctatcaaaaagagaattataagacttttcagaaagagaatgatcatcgtatgaat-aaaattttgatttgtaagatccatttaatatggtaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21046356 |
attattctctatcaaaaagagaattataagacttttcagaaagagaatgattatcgtatgaatgaaaattttgatttgtaagatcaatttaatatggtaa |
21046257 |
T |
|
| Q |
108 |
aatgtgctcatagaaaatatcatttcaagaaatgaagatttgtgtagttttcagataaaaaagaatataacccttgacaccacttttataacccaagaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21046256 |
aatgtgctcatagaaaatatcatttcaagaaatgaagatttgtgtagttttcagataaaaaagaatataacccttggcaccacttttataacccaagaaa |
21046157 |
T |
|
| Q |
208 |
acaca |
212 |
Q |
| |
|
||||| |
|
|
| T |
21046156 |
acaca |
21046152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 21094030 - 21093800
Alignment:
| Q |
9 |
attattctctatcaaaaagagaattataagacttttcagaaagagaatgatcatcgtatgaat-aaaattttgatttgtaagatccatttaatatggtaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21094030 |
attattctctatcaaaaagagaattataagacttttcagaaagagaatgatcatcgtatgaatgaaaattttgatttgtaagatcaatttaatatggtaa |
21093931 |
T |
|
| Q |
108 |
aatgtgctcatagaaaatatcatttcaagaaatgaagatttgtgtagttttcagataaaaaagaatataacccttgacaccacttttataacccaagaaa |
207 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
21093930 |
aatgtgctcgtagaaaatatcattttcagaaatgaagatttgtgtagttttcagataaaaaagaatataacccttgggaccagttttataacccaagaaa |
21093831 |
T |
|
| Q |
208 |
acacannnnnnnngctctagcatcaagttta |
238 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
21093830 |
acacataatttttgctctagcatcaagttta |
21093800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 21071082 - 21070916
Alignment:
| Q |
9 |
attattctctatcaaaaagagaattataagacttttcagaaagagaatgatcatcgtatgaat-aaaattttgatttgtaagatccatttaatatggtaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21071082 |
attattctctatcaaaaagagaattataagacttttcagaaagagaatgctcatcgtatgaatgaaaattttgatttgtaagatcaatttaatatggtaa |
21070983 |
T |
|
| Q |
108 |
aatgtgctcatagaaaatatcatttcaagaaatgaagatttgtgtagttttcagataaaaaagaata |
174 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21070982 |
aatgtgctcaaagaaaatatcatttcaagtaatgaagatttgtgtagttttcaaataaaaaagaata |
21070916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 21069513 - 21069467
Alignment:
| Q |
166 |
aaaagaatataacccttgacaccacttttataacccaagaaaacaca |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21069513 |
aaaagaatataacccttggcaccacttttataacccaagaaaacaca |
21069467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University