View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15731_high_3 (Length: 581)

Name: NF15731_high_3
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15731_high_3
NF15731_high_3
[»] chr2 (18 HSPs)
chr2 (241-456)||(35357217-35357431)
chr2 (7-200)||(29439725-29439919)
chr2 (9-200)||(36809091-36809283)
chr2 (9-129)||(26358824-26358944)
chr2 (127-230)||(26363984-26364087)
chr2 (309-450)||(35351983-35352126)
chr2 (9-124)||(38006019-38006134)
chr2 (456-566)||(35357081-35357191)
chr2 (9-124)||(25873355-25873470)
chr2 (9-124)||(25869987-25870102)
chr2 (11-90)||(10600117-10600196)
chr2 (14-102)||(25821672-25821760)
chr2 (14-78)||(16788545-16788609)
chr2 (22-77)||(30275472-30275527)
chr2 (109-169)||(30275406-30275467)
chr2 (16-79)||(25139818-25139881)
chr2 (456-566)||(35351842-35351951)
chr2 (493-543)||(35346696-35346746)
[»] chr3 (20 HSPs)
chr3 (7-230)||(18645368-18645591)
chr3 (7-200)||(10884168-10884362)
chr3 (9-166)||(16185346-16185504)
chr3 (9-124)||(17532450-17532565)
chr3 (16-121)||(23299289-23299394)
chr3 (16-124)||(6922049-6922157)
chr3 (14-124)||(35411834-35411944)
chr3 (22-119)||(538180-538277)
chr3 (11-90)||(53815126-53815205)
chr3 (30-119)||(10107365-10107454)
chr3 (108-192)||(8462244-8462327)
chr3 (7-79)||(6445439-6445511)
chr3 (7-79)||(55032715-55032787)
chr3 (16-79)||(52198464-52198527)
chr3 (7-77)||(54736631-54736701)
chr3 (22-79)||(28265166-28265223)
chr3 (22-90)||(54460541-54460609)
chr3 (23-90)||(8462325-8462392)
chr3 (108-169)||(54460607-54460669)
chr3 (26-77)||(9392057-9392108)
[»] chr4 (17 HSPs)
chr4 (7-230)||(5721598-5721821)
chr4 (7-230)||(37103893-37104111)
chr4 (9-211)||(9717103-9717305)
chr4 (9-195)||(15431316-15431503)
chr4 (9-195)||(15437930-15438117)
chr4 (16-108)||(18910763-18910855)
chr4 (14-86)||(3798567-3798639)
chr4 (9-79)||(19861065-19861135)
chr4 (21-79)||(33410740-33410798)
chr4 (9-102)||(5680621-5680714)
chr4 (23-79)||(27013396-27013452)
chr4 (14-79)||(12237511-12237576)
chr4 (16-79)||(40617590-40617653)
chr4 (9-79)||(19865421-19865491)
chr4 (9-78)||(53093873-53093941)
chr4 (21-77)||(5669792-5669848)
chr4 (23-79)||(49269901-49269956)
[»] chr5 (14 HSPs)
chr5 (7-230)||(42061636-42061859)
chr5 (11-124)||(28788133-28788246)
chr5 (9-166)||(28441871-28442029)
chr5 (9-102)||(37214918-37215011)
chr5 (9-92)||(32837235-32837318)
chr5 (9-79)||(21336499-21336569)
chr5 (9-107)||(43490945-43491043)
chr5 (14-79)||(21827798-21827863)
chr5 (22-79)||(21333483-21333540)
chr5 (16-79)||(22937833-22937896)
chr5 (22-77)||(31863037-31863092)
chr5 (23-77)||(40916667-40916721)
chr5 (7-74)||(14376638-14376704)
chr5 (14-87)||(39191488-39191561)
[»] chr1 (6 HSPs)
chr1 (7-200)||(2793449-2793643)
chr1 (9-195)||(29643969-29644156)
chr1 (9-120)||(1951082-1951193)
chr1 (9-108)||(42021875-42021974)
chr1 (9-102)||(49499323-49499416)
chr1 (9-79)||(34733042-34733111)
[»] scaffold0080 (1 HSPs)
scaffold0080 (7-200)||(26395-26589)
[»] scaffold0015 (1 HSPs)
scaffold0015 (7-200)||(197381-197575)
[»] chr7 (8 HSPs)
chr7 (9-166)||(10431538-10431696)
chr7 (16-108)||(8276171-8276263)
chr7 (16-108)||(26556669-26556761)
chr7 (7-192)||(2441964-2442127)
chr7 (11-90)||(45287904-45287983)
chr7 (11-90)||(45291240-45291319)
chr7 (9-90)||(4542226-4542306)
chr7 (108-169)||(4542304-4542366)
[»] scaffold0005 (1 HSPs)
scaffold0005 (21-123)||(291127-291229)
[»] chr6 (6 HSPs)
chr6 (9-192)||(34501566-34501728)
chr6 (21-92)||(2371577-2371648)
chr6 (21-102)||(9953200-9953281)
chr6 (9-79)||(5738967-5739037)
chr6 (16-90)||(23379580-23379654)
chr6 (16-90)||(23388919-23388993)
[»] chr8 (13 HSPs)
chr8 (14-192)||(43682483-43682640)
chr8 (14-123)||(20520109-20520217)
chr8 (9-102)||(45156673-45156766)
chr8 (16-102)||(25595439-25595525)
chr8 (7-79)||(17895295-17895367)
chr8 (16-102)||(25592254-25592340)
chr8 (21-86)||(33878009-33878074)
chr8 (7-79)||(5540773-5540845)
chr8 (16-91)||(25228171-25228246)
chr8 (16-102)||(18722065-18722151)
chr8 (86-149)||(25229451-25229515)
chr8 (21-79)||(10663175-10663233)
chr8 (23-79)||(23612745-23612801)
[»] scaffold0270 (3 HSPs)
scaffold0270 (21-90)||(826-895)
scaffold0270 (21-90)||(4186-4255)
scaffold0270 (21-90)||(11316-11385)
[»] scaffold0035 (1 HSPs)
scaffold0035 (16-79)||(61756-61819)
[»] scaffold0381 (1 HSPs)
scaffold0381 (23-79)||(6331-6387)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 241 - 456
Target Start/End: Complemental strand, 35357431 - 35357217
Alignment:
241 ttgccaatgttctaattgcttccgacatcgttgtctttgtttatctgctatcaactgtatataaagttatgttatcaactctaagctatttgctatttaa 340  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35357431 ttgccaatgttctaattgcttccgacgtcgttgtctttgtttatctgctatcaactgtatataaagttatgttatcaactctaagctatttgctatttaa 35357332  T
341 tagagttttaatgtgttgttggcgttattgctaagtgcgaggtgagtttgaagccataaattggattaaaaaatgaatgttggacaatagaggtgagaga 440  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
35357331 tagagttttaatgtgttgttggtgttattgctaagtgcgaggtaagtttgaagccataaattggattaaaaaatgaatgttggac-atagtggtgagaga 35357233  T
441 actcataaattgaatg 456  Q
    |||||||||| |||||    
35357232 actcataaatcgaatg 35357217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 29439725 - 29439919
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa 106  Q
    |||||| ||||||  |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |    
29439725 gaagcacaggatgaagttcattcgatattggttaaaacgtgtcacgatggctatttcgtgacacgattttagggacatgtggcataaggaaagaaatgta 29439824  T
107 agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa 200  Q
    ||||||||||||||||||| |||||||||||| |  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
29439825 agcaagagaaaatatgatcaaaaagagcaaaataaaaggtgtcaagaagcaatggaattaagaattcatatgggcttatgtttgatccaagagaa 29439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 36809283 - 36809091
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| | |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| |||| ||||| ||| ||||||||| |||    
36809283 agcacaggatgagattcattcgacattggttaaaacgtgtcacgatggctattttgtgacacgattttaggaacatttggcacaaggaaagaaatgtaag 36809184  T
109 caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa 200  Q
    ||| | ||||||||||| |||||||||||| | ||||||||||||||||||||| |||||||  | ||||||||||| |||||||||| ||||    
36809183 caacataaaatatgatcaaaaagagcaaaacaagaggtgtcaagaagcaatggaattaagaatgcgtatgggcttatatttgatccaagagaa 36809091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 26358824 - 26358944
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||    
26358824 agcacaggatgaggttcattcggcattggttaaatcgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaaag 26358923  T
109 caagagaaaatatgatcaaaa 129  Q
    || ||||||||||||||||||    
26358924 caggagaaaatatgatcaaaa 26358944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 26363984 - 26364087
Alignment:
127 aaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaaggtaacatacaatgacttga 226  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
26363984 aaagagcaaaacaggaggtgtcaagaagcaatagatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaaggtaacatgcaatgacttga 26364083  T
227 taac 230  Q
    ||||    
26364084 taac 26364087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 309 - 450
Target Start/End: Complemental strand, 35352126 - 35351983
Alignment:
309 atgttatcaactctaagctatttgctatttaatagagttttaatgtgttgttggcgttattgctaagtgcgaggtgagtttgaagccataaattgga--t 406  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||| |||| ||||||| ||       
35352126 atgttatcaactctaagctatttactatttaatagagttttaatgtgttgttggcggtattgctaatagcgaggtgagtttaaagcaataaatttgaaca 35352027  T
407 taaaaaatgaatgttggacaatagaggtgagagaactcataaat 450  Q
     ||||||||||||||| ||||| ||||||||||||  |||||||    
35352026 aaaaaaatgaatgttgaacaattgaggtgagagaatccataaat 35351983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 38006134 - 38006019
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||||| ||| ||| |||||||||    
38006134 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgatttcaggaacatgtggcacaaggaaataaatgaaag 38006035  T
109 caagagaaaatatgat 124  Q
    ||||||||||||||||    
38006034 caagagaaaatatgat 38006019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 456 - 566
Target Start/End: Complemental strand, 35357191 - 35357081
Alignment:
456 gtgtctctgaattatatggttcgataaaaaatccaaatgaatgaaataatttgatccaaatgcggattatcctccgaactccactcttgatagaaaagtt 555  Q
    |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
35357191 gtgtctctgaattatatgattcgacaaagaatccaagtgaatgaaataatttggtccaaatgcggattatcctcagaactctactcttgatagaaaagtt 35357092  T
556 agagagttttt 566  Q
     ||||||||||    
35357091 tgagagttttt 35357081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 25873355 - 25873470
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| | ||  ||| |||||||||    
25873355 agcacaggatgaggttcattcgacattggttaaaccgtgtcacgatggctatttcgtgacacgattttaggaacatgtggtacaatgaaataaatgaaag 25873454  T
109 caagagaaaatatgat 124  Q
    ||||||||||||||||    
25873455 caagagaaaatatgat 25873470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 25869987 - 25870102
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| ||||||  ||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||| |||||||||| ||| ||| | |||||||    
25869987 agcacaggatgaagttcattcgacattgattaaaacgtgtcacgatggctatttcgtgatacgattttaggaacatgtggcacaaggaaatagatgaaag 25870086  T
109 caagagaaaatatgat 124  Q
    ||||||||||||||||    
25870087 caagagaaaatatgat 25870102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 10600117 - 10600196
Alignment:
11 cataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||    
10600117 cataggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca 10600196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 25821760 - 25821672
Alignment:
14 aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa 102  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||    
25821760 aggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaa 25821672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 16788545 - 16788609
Alignment:
14 aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttag 78  Q
    ||||||| ||| |||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
16788545 aggatggagtttattcgatattggttaaaacgtgtcacgatggctatttcgtgacacgattttag 16788609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 30275527 - 30275472
Alignment:
22 gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta 77  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
30275527 gttcattcgacattggttaaaacgtgtcacgatggttatttcgtgacacgatttta 30275472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 30275467 - 30275406
Alignment:
109 caagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaa 169  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||    
30275467 caagagaaaatatgatcaaaaagagcaaaagaggaggtgtcaagaagtaatggaattaagaa 30275406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 25139881 - 25139818
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||| |||||||| |||||| |||||| |||||||| |||||||||||| ||||||||||||||    
25139881 gatgaggttcattagacattagttaaaacgtgtcacaatggctatttcgtgacacgattttagg 25139818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 566
Target Start/End: Complemental strand, 35351951 - 35351842
Alignment:
456 gtgtctctgaattatatggttcgataaaaaatccaaatgaatgaaataatttgatccaaatgcggatt--atcctccgaactccactcttgatagaaaag 553  Q
    |||||| |||||||||||||||||||||     ||||||||||||||| |||  ||||||| |||||   ||||||||||||||||||||||   | |||    
35351951 gtgtctttgaattatatggttcgataaagg---caaatgaatgaaatacttttgtccaaatacggatataatcctccgaactccactcttgacccagaag 35351855  T
554 ttagagagttttt 566  Q
    || ||||||||||    
35351854 tttgagagttttt 35351842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 543
Target Start/End: Complemental strand, 35346746 - 35346696
Alignment:
493 tgaatgaaataatttgatccaaatgcggattatcctccgaactccactctt 543  Q
    ||||| |||| ||||| ||||||||||||| |||||||||||||| |||||    
35346746 tgaataaaatgatttggtccaaatgcggataatcctccgaactccgctctt 35346696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 6e-97; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 18645591 - 18645368
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa 106  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
18645591 gaagcacaggatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaa 18645492  T
107 agcaagagaaaatatgatcaaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa 206  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18645491 agcaagagaaaatatgataaaaagagcaaaacaggaggtttcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa 18645392  T
207 ggtaacatacaatgacttgataac 230  Q
    |||||||| |||||||||| ||||    
18645391 ggtaacatgcaatgacttgctaac 18645368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 10884168 - 10884362
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa 106  Q
    |||||| |||||  |||||||||||||||| ||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| ||| ||||||||| |    
10884168 gaagcacaggattaggttcattcgacattgattaaaacgtgtcatgatggccatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgta 10884267  T
107 agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa 200  Q
    ||||||||||||||| ||| |||||||||||| |  ||||||||||||||||| || ||||||| ||||||   |||||||||||||||| ||||    
10884268 agcaagagaaaatataatcaaaaagagcaaaataaaaggtgtcaagaagcaatagaattaagaattcatataaacttatgtttgatccaagagaa 10884362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 16185504 - 16185346
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| |||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| || |    
16185504 agcacaggatgaggttcactcgacattggctaaaacgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaataaacg 16185405  T
109 caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaa 166  Q
    |||||||||||||| || |||||||||||| || |||||||||||||||||||||||||    
16185404 caagagaaaatatggtcaaaaagagcaaaagagaaggtgtcaagaagcaatggatttaa 16185346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 17532565 - 17532450
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| ||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| |||||||||| ||| |||||||||||||    
17532565 agcacaggatgaggttcattcgatattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacatgtggcacaaggaaagaaatgaaag 17532466  T
109 caagagaaaatatgat 124  Q
    ||||||||||||||||    
17532465 caagagaaaatatgat 17532450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 23299394 - 23299289
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaagaga 115  Q
    |||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||||||||||||||    
23299394 gatgaggttcattcgacattgattaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaataaatgaaagcaagaga 23299295  T
116 aaatat 121  Q
    ||||||    
23299294 aaatat 23299289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 6922049 - 6922157
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaagaga 115  Q
    |||| ||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||||||||||||||    
6922049 gatgaggttcattcaacattggtgaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaataaatgaaagcaagaga 6922148  T
116 aaatatgat 124  Q
    |||||||||    
6922149 aaatatgat 6922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 35411834 - 35411944
Alignment:
14 aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaaga 113  Q
    |||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||  |||||||||    
35411834 aggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaacaaaagcaaga 35411933  T
114 gaaaatatgat 124  Q
     ||||||||||    
35411934 taaaatatgat 35411944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 538180 - 538277
Alignment:
22 gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaagagaaaat 119  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
538180 gttcattcgacattggttaaaacgtgttacgatggttatttcgtgacacgattttagggacatatggcacaaggaaagaaatgaaagcaagagaaaat 538277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 53815126 - 53815205
Alignment:
11 cataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||||||||    
53815126 cataggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca 53815205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 10107454 - 10107365
Alignment:
30 gacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaagagaaaat 119  Q
    ||||||||||||| || || ||||||| ||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
10107454 gacattggttaaaacgcgttacgatggttatttcgtgacacgattttagggacatatggcacaaggaaagaaatgaaagcaagagaaaat 10107365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 8462327 - 8462244
Alignment:
108 gcaagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatc 192  Q
    |||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |  |||||||||||||||||||    
8462327 gcaagagaaaatatgatcaaaaagagcaaaacaggatgtgtcaagaagcaatggatttaagaatt--tatgggcttatgtttgatc 8462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 6445511 - 6445439
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
6445511 gaagcacatgatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 6445439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 55032787 - 55032715
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||| | |||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||    
55032787 gaagcacatgatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg 55032715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 52198464 - 52198527
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
52198464 gatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttagg 52198527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 54736701 - 54736631
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta 77  Q
    ||||||||||||| ||||||||||  |||||||||| |||||||||||| |||||||| ||||||||||||    
54736701 gaagcataggatgaggttcattcggtattggttaaaacgtgtcacgatgtctatttcgtgacacgatttta 54736631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 28265166 - 28265223
Alignment:
22 gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
28265166 gttcattcgacattggttaaaacgtgtcacggtggctatttcgtgacacgattttagg 28265223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 54460541 - 54460609
Alignment:
22 gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    |||||||| | |||||||||| ||||||||||||||||||||| |||||||||||| | ||||||||||    
54460541 gttcattcaagattggttaaaacgtgtcacgatggctatttcgtgacacgattttaagaacatgtggca 54460609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 8462392 - 8462325
Alignment:
23 ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    |||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||| ||||| ||||||    
8462392 ttcattcgacattgattaaaacgtatcacgatggctatttcgtgacacgattttaaggacacgtggca 8462325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 54460607 - 54460669
Alignment:
108 gcaagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaa 169  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||    
54460607 gcaagagaaaatatgatcaaaaagagcaaaacaggaggtgtcaagaagtaatggaattaagaa 54460669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 9392057 - 9392108
Alignment:
26 attcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta 77  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||||||    
9392057 attcgacattggctaaaacgtgtcacgatggctatttcgtgacacgatttta 9392108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 5721821 - 5721598
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa 106  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
5721821 gaagcacaggatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaa 5721722  T
107 agcaagagaaaatatgatcaaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa 206  Q
    |||||||||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5721721 agcaagagaaaatatgataaaaagagcaaaacaggaggtttcaggaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa 5721622  T
207 ggtaacatacaatgacttgataac 230  Q
    |||||||| |||||||||| ||||    
5721621 ggtaacatgcaatgacttgctaac 5721598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 37104111 - 37103893
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa 106  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
37104111 gaagcacaggatgaggttcattcgacattggttaaatcgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaa 37104012  T
107 agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaa 205  Q
    ||||| ||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37104011 agcaaaagaaaatatgatcaaaaagagcaaaa------ctgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaa 37103918  T
206 aggtaacatacaatgacttgataac 230  Q
    ||||||||| |||||||||||||||    
37103917 aggtaacatgcaatgacttgataac 37103893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 9717103 - 9717305
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||    
9717103 agcacaggatgaggttcgttcgacattggttaaatcgtgtcacgatggctctttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaaag 9717202  T
109 caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaag 207  Q
    ||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||  |||||||||||||||||||||    
9717203 caagataaaatatgatcaaaaagagcaaaacaggaggtgttaagaagcaatggaattaagatgtcatatgggcttat-attgatccaaaagaaagaaaag 9717301  T
208 gtaa 211  Q
    ||||    
9717302 gtaa 9717305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 15431316 - 15431503
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||| || |    
15431316 agcacaggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaataaacg 15431415  T
109 caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaa 195  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
15431416 caagagaaaataggatcaaaaagagcaaaacaggaggtgtcaagaagcaatggatttaagaatttatatgggcttatgtttgatccaa 15431503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 15437930 - 15438117
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||| || |    
15437930 agcacaggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaataaacg 15438029  T
109 caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaa 195  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
15438030 caagagaaaataggatcaaaaagagcaaaacaggaggtgtcaagaagcaatggatttaagaatttatatgggcttatgtttgatccaa 15438117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 18910763 - 18910855
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||||    
18910763 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcatgacacgattttagggacatgtggcacaaggaaagaaatgaaag 18910855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 3798639 - 3798567
Alignment:
14 aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgt 86  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||    
3798639 aggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgt 3798567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 19861135 - 19861065
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||    
19861135 agcacaggatgaggttcattcgacattggttaaaacgtgtcaagatggctatttcgtgacacgattttagg 19861065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 33410798 - 33410740
Alignment:
21 ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
33410798 ggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 33410740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 5680621 - 5680714
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa 102  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||  | ||||||||  |||||||||||||| |||||||||| ||| |||||||    
5680621 agcatagaatgaggttcattcgacattggttaaaacgtgtcacttttgctatttcttgacacgattttaggaacatgtggcacaagaaaagaaa 5680714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 27013396 - 27013452
Alignment:
23 ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
27013396 ttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 27013452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 12237511 - 12237576
Alignment:
14 aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||| ||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||    
12237511 aggatgaggttcattcgacattggttaaaatatgtcacgatggctatttcgtgacacgattttagg 12237576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 40617653 - 40617590
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||| |||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||    
40617653 gatgaggttcattcgacattgattaaaacgagtcacgatggctatttcgtgacacgattttagg 40617590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 19865491 - 19865421
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||| |||||| |||||||||||||||||||||| ||||  | ||||||||||||| ||||||||||||||    
19865491 agcacaggatgaggttcattcgacattggttaaaacgtgctaagatggctatttcgtgacacgattttagg 19865421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 53093873 - 53093941
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttag 78  Q
    |||| |||||| ||||||||||||||||||  || ||||||||||||||||||||| |||||||||||||    
53093873 agcacaggatgaggttcattcgacattggtagaa-cgtgtcacgatggctatttcgtgacacgattttag 53093941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 5669792 - 5669848
Alignment:
21 ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta 77  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
5669792 ggtttattcgacattggttaaaacgtgtcacggtggctatttcgtgacacgatttta 5669848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 49269901 - 49269956
Alignment:
23 ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||    
49269901 ttcattcgacattggttaaaacgtgtcacaat-gctatttcgtgacacgattttagg 49269956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 42061636 - 42061859
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa 106  Q
    |||||| | |||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||| |||||||||||    
42061636 gaagcacatgatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacatgattttagggacatgtggcacaaggaaagaaatgaa 42061735  T
107 agcaagagaaaatatgatcaaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa 206  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42061736 agcaagagaaaatatgataaaaagagcaaaacaggaggtttcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa 42061835  T
207 ggtaacatacaatgacttgataac 230  Q
    |||||||| |||||||||| ||||    
42061836 ggtaacatgcaatgacttgctaac 42061859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 28788246 - 28788133
Alignment:
11 cataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagca 110  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||  |||||||||| ||| |||||||||||||||    
28788246 cataggatgaggtttattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagaaacatgtggcacaaggaaagaaatgaaagca 28788147  T
111 agagaaaatatgat 124  Q
    ||||||||||||||    
28788146 agagaaaatatgat 28788133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 28442029 - 28441871
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| |||||| || ||||||| |||| ||||||| ||||||||||||| |||||||||||| |||||||||||| ||| |||||||| || |    
28442029 agcacaggatgaggttcactcaacattggctaaaacgtgtcatgatggctatttcgtgacacgattttaaggacatgtggcacaaggaaagaaataaacg 28441930  T
109 caagagaaaatat-gatcaaaagagcaaaaaaggaggtgtcaagaagcaatggatttaa 166  Q
    ||||||||||||| | | |||||||||||| || |||| ||||||||||||||||||||    
28441929 caagagaaaatatggttaaaaagagcaaaacagaaggtatcaagaagcaatggatttaa 28441871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 37214918 - 37215011
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa 102  Q
    |||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||| ||| |||||||    
37214918 agcacaggatgaggttcattcgacattggttaaaacgtgtcatgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaa 37215011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 32837235 - 32837318
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcata 92  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||    
32837235 agcataggatgagtttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagggacatgtgacata 32837318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 21336569 - 21336499
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
21336569 agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 21336499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 43490945 - 43491043
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaa 107  Q
    |||| |||||| |||||||| | ||||||||||| ||| |||||||| ||||||||  |||||||||||||||||||||||| ||| ||||||||||||    
43490945 agcacaggatgaggttcatttggcattggttaaaacgtatcacgatgtctatttcgtaacacgattttagggacatgtggcacaaggaaagaaatgaaa 43491043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 21827863 - 21827798
Alignment:
14 aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
21827863 aggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 21827798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 21333540 - 21333483
Alignment:
22 gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
21333540 gttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 21333483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 22937896 - 22937833
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||| |||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||    
22937896 gatgaggttcattcgacattgattaaaacgtgtcacgatggctatttcgtgacacgattttagg 22937833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 31863037 - 31863092
Alignment:
22 gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta 77  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
31863037 gttcattcgacattgtttaaatcgtgtcacgatggctatttcgtgacacgatttta 31863092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 40916721 - 40916667
Alignment:
23 ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta 77  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
40916721 ttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgatttta 40916667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 14376704 - 14376638
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatt 74  Q
    |||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||    
14376704 gaagcacaggatgaggttcattcgacattg-ttaaaacgtgtcacgatggctatttcgtgacacgatt 14376638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 39191488 - 39191561
Alignment:
14 aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtg 87  Q
    |||||| |||| |||||| |||||||||| |||||||| ||| ||||||||  ||||||||||| | |||||||    
39191488 aggatgaggtttattcgatattggttaaaacgtgtcacaatgtctatttcgtaacacgattttaagaacatgtg 39191561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 5e-70; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 2793449 - 2793643
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa 106  Q
    |||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |    
2793449 gaagcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgta 2793548  T
107 agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa 200  Q
    ||||||||||||||||||| |||||||||||| |  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
2793549 agcaagagaaaatatgatcaaaaagagcaaaataaaaggtgtcaagaagcaatggaattaagaattcatatgggcttatgtttgatccaagagaa 2793643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 29644156 - 29643969
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| | ||||||||||||||| |||| ||||| ||||||||||||||| |||| |||||||||||||||||||| ||| |||||||| || |    
29644156 agcacaggatgagattcattcgacattggctaaaacgtgttacgatggctatttcgtgacatgattttagggacatgtggcacaaggaaagaaataaacg 29644057  T
109 caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaa 195  Q
    ||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
29644056 caagagaaaatatgatcaaaaagagcaaaacagaaggtgtcaagaagcaatggatttaagaattcatatgggcttatgtttgatccaa 29643969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 1951193 - 1951082
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| |||||||||    
1951193 agcataggatgaggttcattcgacagtggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaataaatgaaag 1951094  T
109 caagagaaaata 120  Q
    ||||||||||||    
1951093 caagagaaaata 1951082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 42021875 - 42021974
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    ||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||    
42021875 agcatcggatgaggttcattcgacattggttaaaacgtgttacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaaag 42021974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 49499416 - 49499323
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa 102  Q
    |||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||    
49499416 agcatatgatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaa 49499323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 34733111 - 34733042
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||| |||||| |||||||||||||||||| |||| |||||||||||||||||||| |||| |||||||||    
34733111 agcacaggatgaggttcattcgacattggtaaaat-gtgtcacgatggctatttcgtgacatgattttagg 34733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 26395 - 26589
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa 106  Q
    |||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||  ||||| ||||||||||||| |||| ||| ||||||||| |    
26395 gaagcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtaacacggttttagggacatggggcacaaggaaagaaatgta 26494  T
107 agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa 200  Q
    ||||||||||||||||||| |||||||||||| |  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
26495 agcaagagaaaatatgatcaaaaagagcaaaacaaaaggtgtcaagaagcaatggaattaagaattcatatgggcttatgtttgatccaagagaa 26589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 197381 - 197575
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa 106  Q
    |||||| |||||| |||||||||||||||| |||||  |||||||||||||||||||  ||||||||||||||||||||||||| ||| ||||||||| |    
197381 gaagcacaggatgaggttcattcgacattgattaaaatgtgtcacgatggctatttcatgacacgattttagggacatgtggcacaaggaaagaaatgta 197480  T
107 agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa 200  Q
    ||||||||||||||||||| |||||||||||| |  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
197481 agcaagagaaaatatgatcaaaaagagcaaaacaaaaggtgtcaagaagcaatggaattaagaattcatatgggcttatgtttgatccaagagaa 197575  T

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Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 10431538 - 10431696
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||| |||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| || |    
10431538 agcacaggatgaggttcactcgacattggctaaaacgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaataaacg 10431637  T
109 caagagaaaatat-gatcaaaagagcaaaaaaggaggtgtcaagaagcaatggatttaa 166  Q
    ||||||||||||| | | |||||||||||| || |||||||||||||||||||||||||    
10431638 caagagaaaatatggttaaaaagagcaaaatagaaggtgtcaagaagcaatggatttaa 10431696  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 8276171 - 8276263
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||    
8276171 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaaag 8276263  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 26556669 - 26556761
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    |||| |||| ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||||    
26556669 gatgaggtttattcgacattggttaaaacgtgtcacgatggctatttcatgacacgattttagggacatgtggcacaaggaaagaaatgaaag 26556761  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 2442127 - 2441964
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa 106  Q
    ||||||||||||| | |||| |||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||                    
2442127 gaagcataggatgag-ttcactcgacattggctaaaacgtatcacgatggctatttcgtgacacgattttagggacatgtggca---------------- 2442045  T
107 agcaagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatc 192  Q
        ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
2442044 ----agagaaaatatgatcaaaaagagcaaaacaggaggtgtcaagaagcaatggatttaagaatt--tatgggcttatgtttgatc 2441964  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 45287983 - 45287904
Alignment:
11 cataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||    
45287983 cataagatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca 45287904  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 45291319 - 45291240
Alignment:
11 cataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||    
45291319 catagaatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca 45291240  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 4542226 - 4542306
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    ||||||||||| | |||||||||||||||||||| | ||||||||||| ||||||| ||||| |||||||| ||||||||||    
4542226 agcataggatgag-ttcattcgacattggttaaaacttgtcacgatggatatttcgtgacacaattttaggaacatgtggca 4542306  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 4542304 - 4542366
Alignment:
108 gcaagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaa 169  Q
    ||||||||||||||||| |||| ||| |||| |||||||||||||||| |||||| |||||||    
4542304 gcaagagaaaatatgattaaaaagagaaaaagaggaggtgtcaagaagtaatggaattaagaa 4542366  T

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Target: scaffold0005 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 291127 - 291229
Alignment:
21 ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaagagaaaata 120  Q
    |||||||||||||||||||||| |||||||||||| ||||||||  |||||||||||||||||||||||| ||| |||||||| |||||||||||||| |    
291127 ggttcattcgacattggttaaaacgtgtcacgatgactatttcgtaacacgattttagggacatgtggcacaaggaaagaaattaaagcaagagaaaaca 291226  T
121 tga 123  Q
    |||    
291227 tga 291229  T

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Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 34501566 - 34501728
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag 108  Q
    ||||||||||| ||||||||||||||| | |||| ||||||||||||||||||||  ||||| |||||||||||||||||||                      
34501566 agcataggatgaggttcattcgacattagctaaaacgtgtcacgatggctatttcatgacacaattttagggacatgtggca------------------ 34501647  T
109 caagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatc 192  Q
      ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |  |||||||||||||||||||    
34501648 --agagaaaatatgatcaaaaagagcaaaacaagaggtgtcaagaagcaatggatttaagaatt--tatgggcttatgtttgatc 34501728  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 2371577 - 2371648
Alignment:
21 ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcata 92  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
2371577 ggttcattcgacattggttaaaacgtgtcatgatggctatttcgtgacacgattttagggacatgtggcata 2371648  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 9953200 - 9953281
Alignment:
21 ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa 102  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| |||||||||| ||| |||||||    
9953200 ggttcattcgacattggttaaaacgtgtcacgatagctatttcgtgacacgattttaggaacatgtggcacaagaaaagaaa 9953281  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 5739037 - 5738967
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||| |||||| |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||    
5739037 agcaaaggatgaggttcattcgacattggttaaaacgcgtcacgatggctatttcgtgacacgattttagg 5738967  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 23379654 - 23379580
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    |||| |||||| ||||||||| ||||| ||||||||||| ||||||||| ||||||||| |||| ||||||||||    
23379654 gatgaggttcactcgacattgattaaaacgtgtcacgatagctatttcgtgacacgattctaggaacatgtggca 23379580  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 23388993 - 23388919
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    |||| |||||| ||||||||| ||||| ||||||||||| ||||||||| ||||||||| |||| ||||||||||    
23388993 gatgaggttcactcgacattgattaaaacgtgtcacgatagctatttcgtgacacgattctaggaacatgtggca 23388919  T

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Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 43682640 - 43682483
Alignment:
14 aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaaga 113  Q
    |||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||                     |||||||    
43682640 aggatgaggttcattcgacattggttaaaacgtgtcacgacggctatttcgtgacacgattttagggacatg--------------------cagcaaga 43682561  T
114 gaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatc 192  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |  ||| |||||||||||||||    
43682560 gaaaatatgatcaaaaagagcaaaacatgaggtgtcaagaagcaatggatttaagaatt--tataggcttatgtttgatc 43682483  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 20520109 - 20520217
Alignment:
14 aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaaga 113  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| | || ||| ||| |||  |||||||||||||||||    
20520109 aggatgaggttcattcgacattggttaaaacgtgtcacaatggctatttcgtgacacgatttta-gaacgtgtagcacaagggaagaaatgaaagcaaga 20520207  T
114 gaaaatatga 123  Q
    ||||| ||||    
20520208 gaaaacatga 20520217  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 45156766 - 45156673
Alignment:
9 agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa 102  Q
    |||| |||||| |||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||| |||||||||| ||| |||||||    
45156766 agcacaggatgaggttcattcgacattgattaaaacgtgtcacaatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaa 45156673  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 25595525 - 25595439
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa 102  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| ||| ||| |||||||    
25595525 gatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacatgtcgcacaaggaaagaaa 25595439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 17895367 - 17895295
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
17895367 gaagcacatgatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 17895295  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 25592340 - 25592254
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa 102  Q
    |||| |||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||| |||||| ||| ||| |||||||    
25592340 gatgaggttcattcgacattggttaaaacgtgttacgatgactatttcgtgacacgattttaggaacatgtcgcacaaggaaagaaa 25592254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 33878074 - 33878009
Alignment:
21 ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgt 86  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||    
33878074 ggtttattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgt 33878009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 5540845 - 5540773
Alignment:
7 gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||| |||| |||||||||    
5540845 gaagcacaggatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacatgattttagg 5540773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 25228171 - 25228246
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcat 91  Q
    |||| |||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||| || ||||||    
25228171 gatgaggttcattcgacattggttaaaacgtgttacgatggttatttcgtgacacgattttagggatatatggcat 25228246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 18722151 - 18722065
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa 102  Q
    |||| ||||||||||| || ||||||| |||||||||||| |||||||| |||||||||||||| |||||| ||| ||| |||||||    
18722151 gatgaggttcattcgatatcggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacatgtcgcacaaggaaagaaa 18722065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 25229451 - 25229515
Alignment:
86 tggcataagtaaagaaatgaaagcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtca 149  Q
    ||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
25229451 tggcacaaggaaagaaatgaaagcaagagaaaatatgatcaaaaagagcaaaacaggaggtgtca 25229515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 10663175 - 10663233
Alignment:
21 ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||    
10663175 ggttcaatcgacattggttaaaacgtgtcacgatggatatttcgtgacacgattttagg 10663233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 23612745 - 23612801
Alignment:
23 ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||||||||||| ||||| |||||||| |||||||||||| ||||||||||||||    
23612745 ttcattcgacattgtttaaaacgtgtcacaatggctatttcgtgacacgattttagg 23612801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 895 - 826
Alignment:
21 ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||    
895 ggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca 826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 4255 - 4186
Alignment:
21 ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||    
4255 ggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca 4186  T

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Target: scaffold0270; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 11385 - 11316
Alignment:
21 ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca 90  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||    
11385 ggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca 11316  T

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Target: scaffold0035 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 61756 - 61819
Alignment:
16 gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
61756 gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 61819  T

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Target: scaffold0381 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 6387 - 6331
Alignment:
23 ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg 79  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
6387 ttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 6331  T

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