View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15731_high_5 (Length: 393)
Name: NF15731_high_5
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15731_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 1941075 - 1940746
Alignment:
| Q |
11 |
cagagagcgtaatagttatgatgatgtaaaaatcataatatattgtcatactctttgattaatggcggagatttgtttggcccaggagaggcagatgtgt |
110 |
Q |
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| T |
1941075 |
cagagggcgtaatagttatgatgatgtaaaaatcataatatattgtcatactctttgattaatggcggagatttgttaggcccaggagaggcagatgtgt |
1940976 |
T |
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| Q |
111 |
ctctcaagtgcaggaaatcaggcaggagtggatgcattctatagacagtagcaaattcctcagttaaagagtatggaacaccatgattttctgctctctt |
210 |
Q |
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| T |
1940975 |
ctctcaagtgcaggaaatcaggcaggagtggatgcattctatagacactagcaaattcctcagttaaagagtatggaacaccatgattttctgctctctt |
1940876 |
T |
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| Q |
211 |
catgcccacaaatccactcaatatggagtttccggaatgcccaaatgtgtccttgaatttctttcccagtaatccatacctaaaacaattgaacttttag |
310 |
Q |
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| T |
1940875 |
catgcccacaaatccactcaatatggagtttccggaatgcccaaatgtgtccttgaatttctttcccagtaatccatacctaaaacaattgaacttttag |
1940776 |
T |
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| Q |
311 |
tatcatgacataaattaatgcaatcaacat |
340 |
Q |
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| T |
1940775 |
tatcatgacataaattaatgcaatcaacat |
1940746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 47 - 340
Target Start/End: Complemental strand, 1955771 - 1955479
Alignment:
| Q |
47 |
aatatattgtcatactctttgattaatggcggagatttgtttggcccaggagaggcagatgtgtctctcaagtgcaggaaatcaggcaggagtggatgca |
146 |
Q |
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| T |
1955771 |
aatattttggcatactctttgatcagtggtggagatttgttttgtcctggggtggcagatatgtctctcaaatgcaaagaatcaggtaggagtgcatgca |
1955672 |
T |
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| Q |
147 |
ttctatagacagtagcaaattcctcagttaaagagtatggaacaccatgattttctgctctcttcatgcccacaaatccactcaatatggagtttccgga |
246 |
Q |
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| T |
1955671 |
tcctatagacagtcacaaattcttcagttagagagtatggaacaccatgattatctggttttttcatgcccaccaatccacctaagatagagtcaccaac |
1955572 |
T |
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| Q |
247 |
atgcccaaatgtgtccttgaatttctttcccagtaatccatacctaaaacaattgaacttttagtatcatgacataaattaatgcaatcaacat |
340 |
Q |
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| T |
1955571 |
atgcccaaacgtgtccttgaatttctttcccaataatccatacctaaataaaatcaaatttt-gtaacatgacaaaagttaatgcaatgaacat |
1955479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 97 - 295
Target Start/End: Complemental strand, 1926893 - 1926695
Alignment:
| Q |
97 |
agaggcagatgtgtctctcaagtgcaggaaatcaggcaggagtggatgcattctatagacagtagcaaattcctcagttaaagagtatggaacaccatga |
196 |
Q |
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|||| ||||| |||| ||||| ||||| ||| || |||||| ||||||| ||||||||| | ||||||||||||||||||| ||||||||||||||| |
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| T |
1926893 |
agagtcagatatgtccctcaaatgcagagaattgggtaggagttgatgcatcctatagacactcacaaattcctcagttaaagaatatggaacaccatga |
1926794 |
T |
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| Q |
197 |
ttttctgctctcttcatgcccacaaatccactcaatatggagtttccggaatgcccaaatgtgtccttgaatttctttcccagtaatccatacctaaaa |
295 |
Q |
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| T |
1926793 |
ttttttggtttcttcatacccacaaatccactcaagatggctcctccaaaatgcccaaatttgtccttgattttttttcccaataatccatacctaaaa |
1926695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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