View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15731_low_1 (Length: 639)
Name: NF15731_low_1
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15731_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 55 - 623
Target Start/End: Complemental strand, 49674392 - 49673823
Alignment:
| Q |
55 |
acttgagactaaattatgtattttgaccccgacagcagctgcacggtgcagcagctgaaggggatccatttccttaaattactatacaaggatggaaatt |
154 |
Q |
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| T |
49674392 |
acttgagactaaattatgtattttgaccccgacagcagctgcacggtgcagcagctgaaggggatccatttccttaaattactatacaaggatggaaatt |
49674293 |
T |
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| Q |
155 |
tcaaatttctattctactgtatataatacagtctagtaactgatacttaggattgaacactgttgggtgccaaaattttagtatacgtccaacgaaaaag |
254 |
Q |
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| T |
49674292 |
tcaaatttctattctactgtatataatacagtctagtaactgatacttaggattgaacactgttgggtgccaaaattttagtatacgtccaacgaaaaag |
49674193 |
T |
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| Q |
255 |
tctaagaagttggattttctggtaacctttttt-aacgacctttgttgtgtaacctttggttgaggtctatttaatgcccttcactcaggacaacctccc |
353 |
Q |
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| T |
49674192 |
tcttagaagttggattttctggtaacctttttttaacaacctttgttgtgtaacctttggttgaggtctatttaatgcccttcaatcaggacaacctccc |
49674093 |
T |
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| Q |
354 |
ctctcttaaactctttttaacaatgtgcatgtattgtgaaagcataccttcggcacagtggaattttccttgaatattaagtcggcatcgtcccccttga |
453 |
Q |
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| T |
49674092 |
ctctcttaaactctttttaacaatgcgcatgtattgtgaaagcataccttcggcacagtggaattttccttgaatatcaagtcggcatcgtcccccttga |
49673993 |
T |
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| Q |
454 |
tgatgaagacactggttacaatcatcagataattgtactacaatggagatctgaggagatagaaactcaaaggggtcatcattgggcatgtctcctactg |
553 |
Q |
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| T |
49673992 |
tgatgaagacactggttacaatcatcagataattgtactacaatggagatctgaggagatagaaactcaaaggggtcatcattgggcatgtctcttaccg |
49673893 |
T |
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| Q |
554 |
cagcctgacactgtgtacactgtgctaaagagtttggcactttgaaaggaggggctctcacaatattttg |
623 |
Q |
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| T |
49673892 |
cagcctgacactgtgtacactgtgctaaagagtttggcactttgaaaggaggaggtctcacaatattttg |
49673823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 395 - 623
Target Start/End: Complemental strand, 49723956 - 49723728
Alignment:
| Q |
395 |
gcataccttcggcacagtggaattttccttgaatattaagtcggcatcgtcccccttgatgatgaagacactggttacaatcatcagataattgtactac |
494 |
Q |
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| T |
49723956 |
gcataccttcggcacagtggaattttccttgaatatcaagtcggcatcgtcccccttgatgatgaagacactggttacaatcatcagataattgtactac |
49723857 |
T |
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| Q |
495 |
aatggagatctgaggagatagaaactcaaaggggtcatcattgggcatgtctcctactgcagcctgacactgtgtacactgtgctaaagagtttggcact |
594 |
Q |
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| T |
49723856 |
aatggagatctgaggagatagaaactcaaagggatcatcattgggcatgtctcttactgcagcctgacactgtgtacactgtgctaaagagtttggcact |
49723757 |
T |
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| Q |
595 |
ttgaaaggaggggctctcacaatattttg |
623 |
Q |
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| T |
49723756 |
ttgaaaggaggaggtctcacaatattttg |
49723728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 49674475 - 49674391
Alignment:
| Q |
14 |
caaaggtaccgattaaattgaaaacaagcaataaagtgaagacttgagactaaattatgtattttgaccccgacagcagctgcac |
98 |
Q |
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| T |
49674475 |
caaaggtaccgattaaattgaaaacaagcaataaagtgaagacttgagactaaattatgtattttgaccccgacagcagctgcac |
49674391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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