View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15731_low_12 (Length: 272)
Name: NF15731_low_12
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15731_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 31780775 - 31780534
Alignment:
| Q |
13 |
atacttccgtaaacctgacgaaacttggcacacaagtttattaaccctttgactgatccaatagttgtgaatagtgtaacatcctttctttaaacatgtt |
112 |
Q |
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| T |
31780775 |
atacttccgtaaacctgacgaaacttggcacacaagtttattaagcctttgagtgatccaatagttgtgaatagtgtaacatcctttctttaaacatgtt |
31780676 |
T |
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| Q |
113 |
gcttttacannnnnnncatgccacagattttgttaagcaatgctagctgtatctgaatttggggataatgaccaaaggcttccacatgaaattagtctag |
212 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31780675 |
gcttttacatttttttcatgccacagattttggtaagcaatgctagctgtatctgaatttggggataatgacc-aaggcttccacatgaaattagtctag |
31780577 |
T |
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| Q |
213 |
aatatgctgaccgatccatgtgccttattgtacaagttttgta |
255 |
Q |
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| T |
31780576 |
aatatgctgaccgatccatgtgccttattgtacaagttttgta |
31780534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 2244027 - 2243794
Alignment:
| Q |
13 |
atacttccgtaaacctgacgaaacttggcacacaagtttattaaccctttgactgatccaatagttgtgaatagtgtaacatcctttctttaaacatgtt |
112 |
Q |
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||||| |||||| |||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | || | | |
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| T |
2244027 |
atactcccgtaagcctgacaaaacttggcgcgcaagtttattaagcctttgactgatccaatagttgtgaataatgtaacatcctttttctataaa---- |
2243932 |
T |
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| Q |
113 |
gcttttacannnnnnncatgccacagattttgttaagcaatgctagctgtatctgaatttggg---gataatgaccaaaggcttccacatgaaattagtc |
209 |
Q |
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| T |
2243931 |
--ttttacatttttttcatgccacagattttggtaagcaa----aactgtatctgaatttggggatgatgatgaccaaaagcttccccatgaaattagtc |
2243838 |
T |
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| Q |
210 |
taga------atatgctgaccgatccatgtgccttattgtacaa |
247 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
2243837 |
tagaatatgcatatgctgaccgatccatgtgccttattgtacaa |
2243794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 29059261 - 29059365
Alignment:
| Q |
13 |
atacttccgtaaacctgacgaaacttggcacacaagtttattaaccctttgactgatccaatagttgtgaatagtgtaacatcctttctttaaacatgtt |
112 |
Q |
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||||| || |||||||||| ||||||||| | |||||| || | |||| ||||||||||| ||||||||| |||| |||||||| |||||||||||| |
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| T |
29059261 |
atactcccataaacctgacaaaacttggcgcgtaagtttctttagccttccactgatccaattattgtgaataatgtagcatcctttttttaaacatgtt |
29059360 |
T |
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| Q |
113 |
gcttt |
117 |
Q |
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||||| |
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| T |
29059361 |
gcttt |
29059365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 54034260 - 54034190
Alignment:
| Q |
185 |
caaaggcttccacatgaaattagtctagaatatgctgaccgatccatgtgccttattgtacaagttttgta |
255 |
Q |
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||||| ||||| |||| |||||||||||||| | | |||||||||||||||||| ||||||||||||||| |
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| T |
54034260 |
caaagccttccgcatgtaattagtctagaatgggttaaccgatccatgtgccttactgtacaagttttgta |
54034190 |
T |
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