View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15731_low_16 (Length: 233)
Name: NF15731_low_16
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15731_low_16 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold1640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 31980168 - 31979952
Alignment:
| Q |
23 |
agaacaaccagaagatcatcacagccacaacaaccttcaagaatttttcagtgtcaatattgtcaccgaaaattctacacttctcaagctcttggtggtc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31980168 |
agaacaaccagaagatcatcacagccacaacaaccttcaagaatttttcagtgtcaatattgtcaccgaaaattctacacttctcaagctcttggtggtc |
31980069 |
T |
|
| Q |
123 |
accaaaatgctcacaaacaagaaagagctgctgctagatcaaaaaccatcaacctcaacaccac------cagcaacaacgttgttcctttttcaccacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
31980068 |
accaaaatgctcacaaacaagaaagagctgctgctagatcaaaaaccatcaacctcaacaccaccaacaacaacaacaacgttgttcctttttcaccacc |
31979969 |
T |
|
| Q |
217 |
accacagtcatatgttt |
233 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31979968 |
accacagtcatatgttt |
31979952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 25769354 - 25769311
Alignment:
| Q |
92 |
aaattctacacttctcaagctcttggtggtcaccaaaatgctca |
135 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25769354 |
aaattctccacttctcaagctcttggaggtcaccaaaatgctca |
25769311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 25774935 - 25774892
Alignment:
| Q |
92 |
aaattctacacttctcaagctcttggtggtcaccaaaatgctca |
135 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25774935 |
aaattctccacttctcaagctcttggaggtcaccaaaatgctca |
25774892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 33781929 - 33781999
Alignment:
| Q |
86 |
caccgaaaattctacacttctcaagctcttggtggtcaccaaaatgctcacaaacaagaaagagctgctgc |
156 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||| ||||| || || ||||| | ||| ||||||||||| |
|
|
| T |
33781929 |
caccgcaagttctactcttctcaagctcttggtggccaccagaacgcacacaagctagagagagctgctgc |
33781999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1640 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1640
Description:
Target: scaffold1640; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 542 - 585
Alignment:
| Q |
92 |
aaattctacacttctcaagctcttggtggtcaccaaaatgctca |
135 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
542 |
aaattctccacttctcaagctcttggaggtcaccaaaatgctca |
585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University