View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15731_low_17 (Length: 203)
Name: NF15731_low_17
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15731_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 7e-88; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 2440295 - 2440128
Alignment:
| Q |
21 |
gctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagttt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2440295 |
gctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattataagttt |
2440196 |
T |
|
| Q |
121 |
ttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440195 |
ttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
2440128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 2596588 - 2596754
Alignment:
| Q |
21 |
gctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagttt |
120 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || | |
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| T |
2596588 |
gctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagattatatgtct |
2596687 |
T |
|
| Q |
121 |
ttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctat |
187 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2596688 |
ttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctctcaattagtcctat |
2596754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 2623783 - 2623618
Alignment:
| Q |
23 |
tccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagttttt |
122 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
2623783 |
tccatatgcaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatgtgtttccttaatgaccttagattataagttttt |
2623684 |
T |
|
| Q |
123 |
atgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
188 |
Q |
| |
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|||||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
2623683 |
atgtctctgccatcaattgtcactatcccttcaagtggatcatagaacctctcaattagtcctatg |
2623618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 2569027 - 2569196
Alignment:
| Q |
19 |
aagctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagt |
118 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| || |
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| T |
2569027 |
aagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgttcccttaatgaccttagattatatgt |
2569126 |
T |
|
| Q |
119 |
ttttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
188 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
2569127 |
ctttatgtctctaccatcaattgtcactatccctttaagtggatcatagaatctttcaataagtcctatg |
2569196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 2592239 - 2592074
Alignment:
| Q |
23 |
tccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagttttt |
122 |
Q |
| |
|
||||||| ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||| |
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| T |
2592239 |
tccatatgcaatattttctttgatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgtttccttagtgaccttagattataaattttt |
2592140 |
T |
|
| Q |
123 |
atgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
188 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2592139 |
atgtccctaccatcaattgtcactatccctttaagtggatcatagaacctctcaattagtcctatg |
2592074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 2672402 - 2672571
Alignment:
| Q |
19 |
aagctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagt |
118 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| || |
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| T |
2672402 |
aagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtttcctcaatgacctgagattatatgt |
2672501 |
T |
|
| Q |
119 |
ttttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
188 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2672502 |
ctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatg |
2672571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 2641244 - 2641411
Alignment:
| Q |
21 |
gctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagttt |
120 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| | |
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| T |
2641244 |
gctccgtatgcaatattttcccttatggtaccaccaaacagtgttggttcttgacttacaagtgcaatgtgtttccttaacgaccttagattataagact |
2641343 |
T |
|
| Q |
121 |
ttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
188 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2641344 |
ttatatcttcaccatcaattgtcactatccctttaattggatcatagaatctctcaattagtcctatg |
2641411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 2451020 - 2450853
Alignment:
| Q |
21 |
gctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagttt |
120 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||| | |
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| T |
2451020 |
gctccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagattataagact |
2450921 |
T |
|
| Q |
121 |
ttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
188 |
Q |
| |
|
|||| || |||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||| |
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|
| T |
2450920 |
ttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatg |
2450853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 17870445 - 17870610
Alignment:
| Q |
23 |
tccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgattgtagattataagttttt |
122 |
Q |
| |
|
||||||| |||| || ||||||||||| ||| | ||||||||||||||| ||||||||||| || ||||| |||| ||| | ||| ||||| | |||| |
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| T |
17870445 |
tccatatgcaatgttgtctcttatggttccatttatcaatgttggttcttggctcacaagtgctatgtgttttcttagtgactttaggttatatgatttt |
17870544 |
T |
|
| Q |
123 |
atgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatg |
188 |
Q |
| |
|
|||| | ||||||| | |||||| | ||||| | |||||||||||||||||| |||| ||||||| |
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|
| T |
17870545 |
atgtttgtaccatctattgtcacatttccttttattggatcatagaatctctctattaatcctatg |
17870610 |
T |
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