View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15731_low_2 (Length: 599)
Name: NF15731_low_2
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15731_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 26 - 583
Target Start/End: Original strand, 13850286 - 13850843
Alignment:
| Q |
26 |
gatccattacatctctttcagccaatctaaacatagtctaaatagagaggaagaaatgcaaggtgaaataacacaaacctctgtcataaagaaggaatgg |
125 |
Q |
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| T |
13850286 |
gatccattacatctctttcagccaatctaaacatagtctaaatagagaggaagaaatgcaaggtgaaataacacaaacctctgtcataaagaaggaatgg |
13850385 |
T |
|
| Q |
126 |
aaaccatatggaactctttgaggcaattctacaactgcaacaggatctgctgacattgtttttgcatctatgacatgtacgaacgatttcctgtggtatt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13850386 |
aaaccatatggaactctttgaggcaattctacaactgcaacaggatctgctgacattgtttttgcatctatgacatgtacgaacgatttcctgtggtatt |
13850485 |
T |
|
| Q |
226 |
gttgtttaaactcactctattagggggaaaaatctatnnnnnnnnnnnnnttaaatcatgtcatggtaaatatagagaatttggtacctagtattctcat |
325 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
13850486 |
gttgtttaaactcactctattaggggaaaaaatctaaaaagaaactaaaattaaatcatttcatagtaaatatagagaatttggtacctagtattctcat |
13850585 |
T |
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| Q |
326 |
catgtacaaaaaagatcaagtatccatcatcttcatcggaatcacttccagggacgcgtgggacataaataggatcagagaaaaatgttccttgtcccaa |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13850586 |
catgtacaaaaaagatcaagtatccatcatcttcatcggaatcagttccagggacgcgtgggacataaataggatcagagcaaaatgttccttgtcccaa |
13850685 |
T |
|
| Q |
426 |
gtcatagataccatgaacatttcctccaatttcaagctttgttttgctgaaatcaggtttggcactcaaatcaaattttacaatcccagttggaatgctg |
525 |
Q |
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| T |
13850686 |
gtcatagataccatgaacatttcctccaatttcaagctttgttttgccgaaatcaggtttggcactcaaatcaaattttacaatcccagttggaatgctg |
13850785 |
T |
|
| Q |
526 |
tctaatatggttccatatacatacttctgtttcctgatgaaatgattatagtaaaata |
583 |
Q |
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| T |
13850786 |
tctaatatggttccataaacatacttctgtttcctgatgaaatgattatagtaaaata |
13850843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 89 - 584
Target Start/End: Original strand, 13869150 - 13869646
Alignment:
| Q |
89 |
tgaaataacacaaacctctgtcataaagaaggaatggaaaccatatggaactctttgaggcaattctacaactgcaacaggatctgctgacattgttttt |
188 |
Q |
| |
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|||| |||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13869150 |
tgaagtaacacaaacctctgtaagaaagaaggcatggaaaccatatggaactctttgaggcaattctacaactgcaacaggatctgctgacattgttttt |
13869249 |
T |
|
| Q |
189 |
gcatctatgacatgtacgaacgatttcctgtggtattgttgtttaaactcactctattagggggaaaaatctatnnnnnnnnnnnnnttaaatcatgtca |
288 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
13869250 |
gcatctatgacatggacgaacgatttcctgtggtattgttgtttaaactcactctattagggtgaaaaatct--taaaaatctaaaactaaaccatgtca |
13869347 |
T |
|
| Q |
289 |
tggt---aaatatagagaatttggtacctagtattctcatcatgtacaaaaaagatcaagtatccatcatcttcatcggaatcacttccagggacgcgtg |
385 |
Q |
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| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
13869348 |
tagtcataaatatagagaatttggtacctaatattctcatcatgtacaaaaaagatcaagtatccatcatcttcttcagaatcggttccagggacgcgtg |
13869447 |
T |
|
| Q |
386 |
ggacataaataggatcagagaaaaatgttccttgtcccaagtcatagataccatgaacatttcctccaatttcaagctttgttttgctgaaatcaggttt |
485 |
Q |
| |
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|||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
13869448 |
ggacataaataggatcagagcaaaaagttcctcgtcccaagtcatagataccatgaacatttcctccaacttcaagctttgttttgccgaaatcaggttt |
13869547 |
T |
|
| Q |
486 |
ggcactcaaatcaaattttacaatcccagttggaatgctgtctaatatggttccatatacatacttctgtttcctgatgaaatgattatagtaaaatat |
584 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13869548 |
ggcactcaaatcaaatttaacaatcccagttgtaatgctgtctaatatggttccatatacatacttctgtttcctgatgaaatgtatatagtaaaatat |
13869646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 292 - 583
Target Start/End: Original strand, 13891856 - 13892147
Alignment:
| Q |
292 |
taaatatagagaatttggtacctagtattctcatcatgtacaaaaaagatcaagtatccatcatcttcatcggaatcacttccagggacgcgtgggacat |
391 |
Q |
| |
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| T |
13891856 |
taaatatagagaatttggtacctagtattctcatcatgtacaaaaaagatcaagtatccatcatcttcatcggaatcagttccagggacgcgtgggacat |
13891955 |
T |
|
| Q |
392 |
aaataggatcagagaaaaatgttccttgtcccaagtcatagataccatgaacatttcctccaatttcaagctttgttttgctgaaatcaggtttggcact |
491 |
Q |
| |
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|||||| |||||| |||| |||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||||| | |||| ||||| |||| | |
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| T |
13891956 |
aaatagcatcagaacaaaacgttcctggtcccaagtcatagagaccatgaatatttcctccaacttcaagctttgtttttccaaaattaggttcggcatt |
13892055 |
T |
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| Q |
492 |
caaatcaaattttacaatcccagttggaatgctgtctaatatggttccatatacatacttctgtttcctgatgaaatgattatagtaaaata |
583 |
Q |
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| T |
13892056 |
caaatcaaattttataatcccagttgcattgctgcctaatatggtcccatatacatacttctgtttcctgatgaaatgaatatagtaaaata |
13892147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 13897673 - 13897802
Alignment:
| Q |
89 |
tgaaataacacaaacctctgtcataaagaaggaatggaaaccatatggaactctttgaggcaattctacaactgcaacaggatctgctgacattgttttt |
188 |
Q |
| |
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|||| |||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897673 |
tgaagtaacacaaacctctgtgacaaagaaagcatggaaaccatatggaactctttgaggcaattctacaactgcaacaggatctgctgacattgttttt |
13897772 |
T |
|
| Q |
189 |
gcatctatgacatgtacgaacgatttcctg |
218 |
Q |
| |
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||||||| ||| || ||||| ||||||||| |
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| T |
13897773 |
gcatctaagacgtgcacgaatgatttcctg |
13897802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 13891661 - 13891783
Alignment:
| Q |
101 |
aacctctgtcataaagaaggaatggaaaccatatggaactctttgaggcaattctacaactgcaacaggatctgctgacattgtttttgcatctatgaca |
200 |
Q |
| |
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||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
13891661 |
aacctctgtcacaaagaaagcatggaaaccatatggaactctttgaggcaattctacaactgcaactggatctgctgacattgttttggcatctatgacg |
13891760 |
T |
|
| Q |
201 |
tgtacgaacgatttcctgtggta |
223 |
Q |
| |
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|| || |||||||||||||||| |
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|
| T |
13891761 |
tgcacagacgatttcctgtggta |
13891783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 316 - 515
Target Start/End: Original strand, 13898156 - 13898355
Alignment:
| Q |
316 |
gtattctcatcatgtacaaaaaagatcaagtatccatcatcttcatcggaatcacttccagggacgcgtgggacataaataggatcagagaaaaatgttc |
415 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||| || ||||| | |||||||| || || ||||||| || |||||| ||| ||| |
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| T |
13898156 |
gtattctcgtcatgtacaaaaaagatcaagtatccatcatcttcttcagaatcggtgccagggacacgcggaacataaacagcctcagagccaaaccttc |
13898255 |
T |
|
| Q |
416 |
cttgtcccaagtcatagataccatgaacatttcctccaatttcaagctttgttttgctgaaatcaggtttggcactcaaatcaaattttacaatcccagt |
515 |
Q |
| |
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|| |||||||||||||| ||| ||||||||||||| ||||||||| ||||| | |||| |||||||| |||||||||||| ||||||||||| |
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| T |
13898256 |
ctggtcccaagtcatagtgacccacgacatttcctccaacttcaagcttcgtttttccagaatccggtttggcgtgcaaatcaaatttaacaatcccagt |
13898355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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