View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15731_low_3 (Length: 581)
Name: NF15731_low_3
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15731_low_3 |
 |  |
|
| [»] scaffold0080 (1 HSPs) |
 |  |  |
|
| [»] scaffold0015 (1 HSPs) |
 |  |  |
|
| [»] scaffold0005 (1 HSPs) |
 |  |  |
|
| [»] scaffold0270 (3 HSPs) |
 |  |  |
|
| [»] scaffold0035 (1 HSPs) |
 |  |  |
|
| [»] scaffold0381 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 241 - 456
Target Start/End: Complemental strand, 35357431 - 35357217
Alignment:
| Q |
241 |
ttgccaatgttctaattgcttccgacatcgttgtctttgtttatctgctatcaactgtatataaagttatgttatcaactctaagctatttgctatttaa |
340 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35357431 |
ttgccaatgttctaattgcttccgacgtcgttgtctttgtttatctgctatcaactgtatataaagttatgttatcaactctaagctatttgctatttaa |
35357332 |
T |
 |
| Q |
341 |
tagagttttaatgtgttgttggcgttattgctaagtgcgaggtgagtttgaagccataaattggattaaaaaatgaatgttggacaatagaggtgagaga |
440 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
35357331 |
tagagttttaatgtgttgttggtgttattgctaagtgcgaggtaagtttgaagccataaattggattaaaaaatgaatgttggac-atagtggtgagaga |
35357233 |
T |
 |
| Q |
441 |
actcataaattgaatg |
456 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
35357232 |
actcataaatcgaatg |
35357217 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 29439725 - 29439919
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa |
106 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
29439725 |
gaagcacaggatgaagttcattcgatattggttaaaacgtgtcacgatggctatttcgtgacacgattttagggacatgtggcataaggaaagaaatgta |
29439824 |
T |
 |
| Q |
107 |
agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
29439825 |
agcaagagaaaatatgatcaaaaagagcaaaataaaaggtgtcaagaagcaatggaattaagaattcatatgggcttatgtttgatccaagagaa |
29439919 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 36809283 - 36809091
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| | |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| |||| ||||| ||| ||||||||| ||| |
|
|
| T |
36809283 |
agcacaggatgagattcattcgacattggttaaaacgtgtcacgatggctattttgtgacacgattttaggaacatttggcacaaggaaagaaatgtaag |
36809184 |
T |
 |
| Q |
109 |
caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa |
200 |
Q |
| |
|
||| | ||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||| | ||||||||||| |||||||||| |||| |
|
|
| T |
36809183 |
caacataaaatatgatcaaaaagagcaaaacaagaggtgtcaagaagcaatggaattaagaatgcgtatgggcttatatttgatccaagagaa |
36809091 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 26358824 - 26358944
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
26358824 |
agcacaggatgaggttcattcggcattggttaaatcgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaaag |
26358923 |
T |
 |
| Q |
109 |
caagagaaaatatgatcaaaa |
129 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
26358924 |
caggagaaaatatgatcaaaa |
26358944 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 26363984 - 26364087
Alignment:
| Q |
127 |
aaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaaggtaacatacaatgacttga |
226 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26363984 |
aaagagcaaaacaggaggtgtcaagaagcaatagatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaaggtaacatgcaatgacttga |
26364083 |
T |
 |
| Q |
227 |
taac |
230 |
Q |
| |
|
|||| |
|
|
| T |
26364084 |
taac |
26364087 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 309 - 450
Target Start/End: Complemental strand, 35352126 - 35351983
Alignment:
| Q |
309 |
atgttatcaactctaagctatttgctatttaatagagttttaatgtgttgttggcgttattgctaagtgcgaggtgagtttgaagccataaattgga--t |
406 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||| || |
|
|
| T |
35352126 |
atgttatcaactctaagctatttactatttaatagagttttaatgtgttgttggcggtattgctaatagcgaggtgagtttaaagcaataaatttgaaca |
35352027 |
T |
 |
| Q |
407 |
taaaaaatgaatgttggacaatagaggtgagagaactcataaat |
450 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
35352026 |
aaaaaaatgaatgttgaacaattgaggtgagagaatccataaat |
35351983 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 38006134 - 38006019
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||||| ||| ||| ||||||||| |
|
|
| T |
38006134 |
agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgatttcaggaacatgtggcacaaggaaataaatgaaag |
38006035 |
T |
 |
| Q |
109 |
caagagaaaatatgat |
124 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38006034 |
caagagaaaatatgat |
38006019 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 456 - 566
Target Start/End: Complemental strand, 35357191 - 35357081
Alignment:
| Q |
456 |
gtgtctctgaattatatggttcgataaaaaatccaaatgaatgaaataatttgatccaaatgcggattatcctccgaactccactcttgatagaaaagtt |
555 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
35357191 |
gtgtctctgaattatatgattcgacaaagaatccaagtgaatgaaataatttggtccaaatgcggattatcctcagaactctactcttgatagaaaagtt |
35357092 |
T |
 |
| Q |
556 |
agagagttttt |
566 |
Q |
| |
|
|||||||||| |
|
|
| T |
35357091 |
tgagagttttt |
35357081 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 25873355 - 25873470
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| | || ||| ||||||||| |
|
|
| T |
25873355 |
agcacaggatgaggttcattcgacattggttaaaccgtgtcacgatggctatttcgtgacacgattttaggaacatgtggtacaatgaaataaatgaaag |
25873454 |
T |
 |
| Q |
109 |
caagagaaaatatgat |
124 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25873455 |
caagagaaaatatgat |
25873470 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 25869987 - 25870102
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||| |||||||||| ||| ||| | ||||||| |
|
|
| T |
25869987 |
agcacaggatgaagttcattcgacattgattaaaacgtgtcacgatggctatttcgtgatacgattttaggaacatgtggcacaaggaaatagatgaaag |
25870086 |
T |
 |
| Q |
109 |
caagagaaaatatgat |
124 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25870087 |
caagagaaaatatgat |
25870102 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 10600117 - 10600196
Alignment:
| Q |
11 |
cataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
10600117 |
cataggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca |
10600196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 25821760 - 25821672
Alignment:
| Q |
14 |
aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
25821760 |
aggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaa |
25821672 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 16788545 - 16788609
Alignment:
| Q |
14 |
aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttag |
78 |
Q |
| |
|
||||||| ||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16788545 |
aggatggagtttattcgatattggttaaaacgtgtcacgatggctatttcgtgacacgattttag |
16788609 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 30275527 - 30275472
Alignment:
| Q |
22 |
gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta |
77 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |
|
|
| T |
30275527 |
gttcattcgacattggttaaaacgtgtcacgatggttatttcgtgacacgatttta |
30275472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 30275467 - 30275406
Alignment:
| Q |
109 |
caagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaa |
169 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
30275467 |
caagagaaaatatgatcaaaaagagcaaaagaggaggtgtcaagaagtaatggaattaagaa |
30275406 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 25139881 - 25139818
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||| |||||||| |||||| |||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
25139881 |
gatgaggttcattagacattagttaaaacgtgtcacaatggctatttcgtgacacgattttagg |
25139818 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 566
Target Start/End: Complemental strand, 35351951 - 35351842
Alignment:
| Q |
456 |
gtgtctctgaattatatggttcgataaaaaatccaaatgaatgaaataatttgatccaaatgcggatt--atcctccgaactccactcttgatagaaaag |
553 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||||| | ||| |
|
|
| T |
35351951 |
gtgtctttgaattatatggttcgataaagg---caaatgaatgaaatacttttgtccaaatacggatataatcctccgaactccactcttgacccagaag |
35351855 |
T |
 |
| Q |
554 |
ttagagagttttt |
566 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
35351854 |
tttgagagttttt |
35351842 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 543
Target Start/End: Complemental strand, 35346746 - 35346696
Alignment:
| Q |
493 |
tgaatgaaataatttgatccaaatgcggattatcctccgaactccactctt |
543 |
Q |
| |
|
||||| |||| ||||| ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
35346746 |
tgaataaaatgatttggtccaaatgcggataatcctccgaactccgctctt |
35346696 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 6e-97; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 18645591 - 18645368
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa |
106 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
18645591 |
gaagcacaggatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaa |
18645492 |
T |
 |
| Q |
107 |
agcaagagaaaatatgatcaaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18645491 |
agcaagagaaaatatgataaaaagagcaaaacaggaggtttcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa |
18645392 |
T |
 |
| Q |
207 |
ggtaacatacaatgacttgataac |
230 |
Q |
| |
|
|||||||| |||||||||| |||| |
|
|
| T |
18645391 |
ggtaacatgcaatgacttgctaac |
18645368 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 10884168 - 10884362
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa |
106 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||| ||||||| |||||| |||||| ||||||||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
10884168 |
gaagcacaggattaggttcattcgacattgattaaaacgtgtcatgatggccatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgta |
10884267 |
T |
 |
| Q |
107 |
agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa |
200 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| | ||||||||||||||||| || ||||||| |||||| |||||||||||||||| |||| |
|
|
| T |
10884268 |
agcaagagaaaatataatcaaaaagagcaaaataaaaggtgtcaagaagcaatagaattaagaattcatataaacttatgtttgatccaagagaa |
10884362 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 16185504 - 16185346
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| |||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| || | |
|
|
| T |
16185504 |
agcacaggatgaggttcactcgacattggctaaaacgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaataaacg |
16185405 |
T |
 |
| Q |
109 |
caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaa |
166 |
Q |
| |
|
|||||||||||||| || |||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
16185404 |
caagagaaaatatggtcaaaaagagcaaaagagaaggtgtcaagaagcaatggatttaa |
16185346 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 17532565 - 17532450
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
17532565 |
agcacaggatgaggttcattcgatattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacatgtggcacaaggaaagaaatgaaag |
17532466 |
T |
 |
| Q |
109 |
caagagaaaatatgat |
124 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17532465 |
caagagaaaatatgat |
17532450 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 23299394 - 23299289
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaagaga |
115 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
23299394 |
gatgaggttcattcgacattgattaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaataaatgaaagcaagaga |
23299295 |
T |
 |
| Q |
116 |
aaatat |
121 |
Q |
| |
|
|||||| |
|
|
| T |
23299294 |
aaatat |
23299289 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 6922049 - 6922157
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaagaga |
115 |
Q |
| |
|
|||| ||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
6922049 |
gatgaggttcattcaacattggtgaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaataaatgaaagcaagaga |
6922148 |
T |
 |
| Q |
116 |
aaatatgat |
124 |
Q |
| |
|
||||||||| |
|
|
| T |
6922149 |
aaatatgat |
6922157 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 35411834 - 35411944
Alignment:
| Q |
14 |
aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaaga |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||| ||||||||| |
|
|
| T |
35411834 |
aggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaacaaaagcaaga |
35411933 |
T |
 |
| Q |
114 |
gaaaatatgat |
124 |
Q |
| |
|
|||||||||| |
|
|
| T |
35411934 |
taaaatatgat |
35411944 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 538180 - 538277
Alignment:
| Q |
22 |
gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaagagaaaat |
119 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
538180 |
gttcattcgacattggttaaaacgtgttacgatggttatttcgtgacacgattttagggacatatggcacaaggaaagaaatgaaagcaagagaaaat |
538277 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 53815126 - 53815205
Alignment:
| Q |
11 |
cataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
53815126 |
cataggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca |
53815205 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 10107454 - 10107365
Alignment:
| Q |
30 |
gacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaagagaaaat |
119 |
Q |
| |
|
||||||||||||| || || ||||||| ||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
10107454 |
gacattggttaaaacgcgttacgatggttatttcgtgacacgattttagggacatatggcacaaggaaagaaatgaaagcaagagaaaat |
10107365 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 8462327 - 8462244
Alignment:
| Q |
108 |
gcaagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatc |
192 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
8462327 |
gcaagagaaaatatgatcaaaaagagcaaaacaggatgtgtcaagaagcaatggatttaagaatt--tatgggcttatgtttgatc |
8462244 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 6445511 - 6445439
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6445511 |
gaagcacatgatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg |
6445439 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 55032787 - 55032715
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
55032787 |
gaagcacatgatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagg |
55032715 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 52198464 - 52198527
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
52198464 |
gatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttagg |
52198527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 54736701 - 54736631
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta |
77 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||||||||||| |||||||| |||||||||||| |
|
|
| T |
54736701 |
gaagcataggatgaggttcattcggtattggttaaaacgtgtcacgatgtctatttcgtgacacgatttta |
54736631 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 28265166 - 28265223
Alignment:
| Q |
22 |
gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
28265166 |
gttcattcgacattggttaaaacgtgtcacggtggctatttcgtgacacgattttagg |
28265223 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 54460541 - 54460609
Alignment:
| Q |
22 |
gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
54460541 |
gttcattcaagattggttaaaacgtgtcacgatggctatttcgtgacacgattttaagaacatgtggca |
54460609 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 8462392 - 8462325
Alignment:
| Q |
23 |
ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
8462392 |
ttcattcgacattgattaaaacgtatcacgatggctatttcgtgacacgattttaaggacacgtggca |
8462325 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 54460607 - 54460669
Alignment:
| Q |
108 |
gcaagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaa |
169 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
54460607 |
gcaagagaaaatatgatcaaaaagagcaaaacaggaggtgtcaagaagtaatggaattaagaa |
54460669 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 9392057 - 9392108
Alignment:
| Q |
26 |
attcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta |
77 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
9392057 |
attcgacattggctaaaacgtgtcacgatggctatttcgtgacacgatttta |
9392108 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 5721821 - 5721598
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa |
106 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
5721821 |
gaagcacaggatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaa |
5721722 |
T |
 |
| Q |
107 |
agcaagagaaaatatgatcaaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5721721 |
agcaagagaaaatatgataaaaagagcaaaacaggaggtttcaggaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa |
5721622 |
T |
 |
| Q |
207 |
ggtaacatacaatgacttgataac |
230 |
Q |
| |
|
|||||||| |||||||||| |||| |
|
|
| T |
5721621 |
ggtaacatgcaatgacttgctaac |
5721598 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 37104111 - 37103893
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa |
106 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
37104111 |
gaagcacaggatgaggttcattcgacattggttaaatcgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaa |
37104012 |
T |
 |
| Q |
107 |
agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaa |
205 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37104011 |
agcaaaagaaaatatgatcaaaaagagcaaaa------ctgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaa |
37103918 |
T |
 |
| Q |
206 |
aggtaacatacaatgacttgataac |
230 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
37103917 |
aggtaacatgcaatgacttgataac |
37103893 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 9717103 - 9717305
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
9717103 |
agcacaggatgaggttcgttcgacattggttaaatcgtgtcacgatggctctttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaaag |
9717202 |
T |
 |
| Q |
109 |
caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaag |
207 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9717203 |
caagataaaatatgatcaaaaagagcaaaacaggaggtgttaagaagcaatggaattaagatgtcatatgggcttat-attgatccaaaagaaagaaaag |
9717301 |
T |
 |
| Q |
208 |
gtaa |
211 |
Q |
| |
|
|||| |
|
|
| T |
9717302 |
gtaa |
9717305 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 15431316 - 15431503
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||| || | |
|
|
| T |
15431316 |
agcacaggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaataaacg |
15431415 |
T |
 |
| Q |
109 |
caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaa |
195 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15431416 |
caagagaaaataggatcaaaaagagcaaaacaggaggtgtcaagaagcaatggatttaagaatttatatgggcttatgtttgatccaa |
15431503 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 15437930 - 15438117
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||| || | |
|
|
| T |
15437930 |
agcacaggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaataaacg |
15438029 |
T |
 |
| Q |
109 |
caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaa |
195 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15438030 |
caagagaaaataggatcaaaaagagcaaaacaggaggtgtcaagaagcaatggatttaagaatttatatgggcttatgtttgatccaa |
15438117 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 18910763 - 18910855
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
18910763 |
gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcatgacacgattttagggacatgtggcacaaggaaagaaatgaaag |
18910855 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 3798639 - 3798567
Alignment:
| Q |
14 |
aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgt |
86 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
3798639 |
aggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgt |
3798567 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 19861135 - 19861065
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
19861135 |
agcacaggatgaggttcattcgacattggttaaaacgtgtcaagatggctatttcgtgacacgattttagg |
19861065 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 33410798 - 33410740
Alignment:
| Q |
21 |
ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33410798 |
ggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg |
33410740 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 5680621 - 5680714
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa |
102 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| |||||||| | |||||||| |||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
5680621 |
agcatagaatgaggttcattcgacattggttaaaacgtgtcacttttgctatttcttgacacgattttaggaacatgtggcacaagaaaagaaa |
5680714 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 27013396 - 27013452
Alignment:
| Q |
23 |
ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27013396 |
ttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg |
27013452 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 12237511 - 12237576
Alignment:
| Q |
14 |
aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
12237511 |
aggatgaggttcattcgacattggttaaaatatgtcacgatggctatttcgtgacacgattttagg |
12237576 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 40617653 - 40617590
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||| |||||||||||||||| ||||| || |||||||||||||||||| |||||||||||||| |
|
|
| T |
40617653 |
gatgaggttcattcgacattgattaaaacgagtcacgatggctatttcgtgacacgattttagg |
40617590 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 19865491 - 19865421
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||| |
|
|
| T |
19865491 |
agcacaggatgaggttcattcgacattggttaaaacgtgctaagatggctatttcgtgacacgattttagg |
19865421 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 53093873 - 53093941
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttag |
78 |
Q |
| |
|
|||| |||||| |||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53093873 |
agcacaggatgaggttcattcgacattggtagaa-cgtgtcacgatggctatttcgtgacacgattttag |
53093941 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 5669792 - 5669848
Alignment:
| Q |
21 |
ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta |
77 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |
|
|
| T |
5669792 |
ggtttattcgacattggttaaaacgtgtcacggtggctatttcgtgacacgatttta |
5669848 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 49269901 - 49269956
Alignment:
| Q |
23 |
ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||||||| |||||||||||||| |
|
|
| T |
49269901 |
ttcattcgacattggttaaaacgtgtcacaat-gctatttcgtgacacgattttagg |
49269956 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 42061636 - 42061859
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa |
106 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
42061636 |
gaagcacatgatgaggttcattcgacattggttaaatcgtgtcacgatagctatttcgtgacatgattttagggacatgtggcacaaggaaagaaatgaa |
42061735 |
T |
 |
| Q |
107 |
agcaagagaaaatatgatcaaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42061736 |
agcaagagaaaatatgataaaaagagcaaaacaggaggtttcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaaagaaaa |
42061835 |
T |
 |
| Q |
207 |
ggtaacatacaatgacttgataac |
230 |
Q |
| |
|
|||||||| |||||||||| |||| |
|
|
| T |
42061836 |
ggtaacatgcaatgacttgctaac |
42061859 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 28788246 - 28788133
Alignment:
| Q |
11 |
cataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagca |
110 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
28788246 |
cataggatgaggtttattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagaaacatgtggcacaaggaaagaaatgaaagca |
28788147 |
T |
 |
| Q |
111 |
agagaaaatatgat |
124 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28788146 |
agagaaaatatgat |
28788133 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 28442029 - 28441871
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| |||||| || ||||||| |||| ||||||| ||||||||||||| |||||||||||| |||||||||||| ||| |||||||| || | |
|
|
| T |
28442029 |
agcacaggatgaggttcactcaacattggctaaaacgtgtcatgatggctatttcgtgacacgattttaaggacatgtggcacaaggaaagaaataaacg |
28441930 |
T |
 |
| Q |
109 |
caagagaaaatat-gatcaaaagagcaaaaaaggaggtgtcaagaagcaatggatttaa |
166 |
Q |
| |
|
||||||||||||| | | |||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
28441929 |
caagagaaaatatggttaaaaagagcaaaacagaaggtatcaagaagcaatggatttaa |
28441871 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 37214918 - 37215011
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa |
102 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
37214918 |
agcacaggatgaggttcattcgacattggttaaaacgtgtcatgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaa |
37215011 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 32837235 - 32837318
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcata |
92 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
32837235 |
agcataggatgagtttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttagggacatgtgacata |
32837318 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 21336569 - 21336499
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21336569 |
agcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg |
21336499 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 43490945 - 43491043
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaa |
107 |
Q |
| |
|
|||| |||||| |||||||| | ||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
43490945 |
agcacaggatgaggttcatttggcattggttaaaacgtatcacgatgtctatttcgtaacacgattttagggacatgtggcacaaggaaagaaatgaaa |
43491043 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 21827863 - 21827798
Alignment:
| Q |
14 |
aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21827863 |
aggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg |
21827798 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 21333540 - 21333483
Alignment:
| Q |
22 |
gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21333540 |
gttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg |
21333483 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 22937896 - 22937833
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22937896 |
gatgaggttcattcgacattgattaaaacgtgtcacgatggctatttcgtgacacgattttagg |
22937833 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 31863037 - 31863092
Alignment:
| Q |
22 |
gttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta |
77 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31863037 |
gttcattcgacattgtttaaatcgtgtcacgatggctatttcgtgacacgatttta |
31863092 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 40916721 - 40916667
Alignment:
| Q |
23 |
ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatttta |
77 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
40916721 |
ttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgatttta |
40916667 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 14376704 - 14376638
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgatt |
74 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
14376704 |
gaagcacaggatgaggttcattcgacattg-ttaaaacgtgtcacgatggctatttcgtgacacgatt |
14376638 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 39191488 - 39191561
Alignment:
| Q |
14 |
aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtg |
87 |
Q |
| |
|
|||||| |||| |||||| |||||||||| |||||||| ||| |||||||| ||||||||||| | ||||||| |
|
|
| T |
39191488 |
aggatgaggtttattcgatattggttaaaacgtgtcacaatgtctatttcgtaacacgattttaagaacatgtg |
39191561 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 5e-70; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 2793449 - 2793643
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa |
106 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
2793449 |
gaagcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgta |
2793548 |
T |
 |
| Q |
107 |
agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
2793549 |
agcaagagaaaatatgatcaaaaagagcaaaataaaaggtgtcaagaagcaatggaattaagaattcatatgggcttatgtttgatccaagagaa |
2793643 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 29644156 - 29643969
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| | ||||||||||||||| |||| ||||| ||||||||||||||| |||| |||||||||||||||||||| ||| |||||||| || | |
|
|
| T |
29644156 |
agcacaggatgagattcattcgacattggctaaaacgtgttacgatggctatttcgtgacatgattttagggacatgtggcacaaggaaagaaataaacg |
29644057 |
T |
 |
| Q |
109 |
caagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaa |
195 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29644056 |
caagagaaaatatgatcaaaaagagcaaaacagaaggtgtcaagaagcaatggatttaagaattcatatgggcttatgtttgatccaa |
29643969 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 1951193 - 1951082
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||| ||||||||| |
|
|
| T |
1951193 |
agcataggatgaggttcattcgacagtggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaataaatgaaag |
1951094 |
T |
 |
| Q |
109 |
caagagaaaata |
120 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1951093 |
caagagaaaata |
1951082 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 42021875 - 42021974
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
42021875 |
agcatcggatgaggttcattcgacattggttaaaacgtgttacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaaag |
42021974 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 49499416 - 49499323
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa |
102 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
49499416 |
agcatatgatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaa |
49499323 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 34733111 - 34733042
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||| |||||| |||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
34733111 |
agcacaggatgaggttcattcgacattggtaaaat-gtgtcacgatggctatttcgtgacatgattttagg |
34733042 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0080 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: scaffold0080
Description:
Target: scaffold0080; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 26395 - 26589
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa |
106 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |||| ||| ||||||||| | |
|
|
| T |
26395 |
gaagcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtaacacggttttagggacatggggcacaaggaaagaaatgta |
26494 |
T |
 |
| Q |
107 |
agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
26495 |
agcaagagaaaatatgatcaaaaagagcaaaacaaaaggtgtcaagaagcaatggaattaagaattcatatgggcttatgtttgatccaagagaa |
26589 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 197381 - 197575
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa |
106 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
197381 |
gaagcacaggatgaggttcattcgacattgattaaaatgtgtcacgatggctatttcatgacacgattttagggacatgtggcacaaggaaagaaatgta |
197480 |
T |
 |
| Q |
107 |
agcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatccaaaagaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
197481 |
agcaagagaaaatatgatcaaaaagagcaaaacaaaaggtgtcaagaagcaatggaattaagaattcatatgggcttatgtttgatccaagagaa |
197575 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 10431538 - 10431696
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||| |||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| || | |
|
|
| T |
10431538 |
agcacaggatgaggttcactcgacattggctaaaacgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaataaacg |
10431637 |
T |
 |
| Q |
109 |
caagagaaaatat-gatcaaaagagcaaaaaaggaggtgtcaagaagcaatggatttaa |
166 |
Q |
| |
|
||||||||||||| | | |||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
10431638 |
caagagaaaatatggttaaaaagagcaaaatagaaggtgtcaagaagcaatggatttaa |
10431696 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 8276171 - 8276263
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
8276171 |
gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagggacatgtggcacaaggaaagaaatgaaag |
8276263 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 26556669 - 26556761
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
26556669 |
gatgaggtttattcgacattggttaaaacgtgtcacgatggctatttcatgacacgattttagggacatgtggcacaaggaaagaaatgaaag |
26556761 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 2442127 - 2441964
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaa |
106 |
Q |
| |
|
||||||||||||| | |||| |||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2442127 |
gaagcataggatgag-ttcactcgacattggctaaaacgtatcacgatggctatttcgtgacacgattttagggacatgtggca---------------- |
2442045 |
T |
 |
| Q |
107 |
agcaagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatc |
192 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
2442044 |
----agagaaaatatgatcaaaaagagcaaaacaggaggtgtcaagaagcaatggatttaagaatt--tatgggcttatgtttgatc |
2441964 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 45287983 - 45287904
Alignment:
| Q |
11 |
cataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
45287983 |
cataagatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca |
45287904 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 45291319 - 45291240
Alignment:
| Q |
11 |
cataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
45291319 |
catagaatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca |
45291240 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 4542226 - 4542306
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| | ||||||||||| ||||||| ||||| |||||||| |||||||||| |
|
|
| T |
4542226 |
agcataggatgag-ttcattcgacattggttaaaacttgtcacgatggatatttcgtgacacaattttaggaacatgtggca |
4542306 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 4542304 - 4542366
Alignment:
| Q |
108 |
gcaagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaa |
169 |
Q |
| |
|
||||||||||||||||| |||| ||| |||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
4542304 |
gcaagagaaaatatgattaaaaagagaaaaagaggaggtgtcaagaagtaatggaattaagaa |
4542366 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 291127 - 291229
Alignment:
| Q |
21 |
ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaagagaaaata |
120 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||||| | |
|
|
| T |
291127 |
ggttcattcgacattggttaaaacgtgtcacgatgactatttcgtaacacgattttagggacatgtggcacaaggaaagaaattaaagcaagagaaaaca |
291226 |
T |
 |
| Q |
121 |
tga |
123 |
Q |
| |
|
||| |
|
|
| T |
291227 |
tga |
291229 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 34501566 - 34501728
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaag |
108 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||| |||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
34501566 |
agcataggatgaggttcattcgacattagctaaaacgtgtcacgatggctatttcatgacacaattttagggacatgtggca------------------ |
34501647 |
T |
 |
| Q |
109 |
caagagaaaatatgatcaaaa-gagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatc |
192 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
34501648 |
--agagaaaatatgatcaaaaagagcaaaacaagaggtgtcaagaagcaatggatttaagaatt--tatgggcttatgtttgatc |
34501728 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 2371577 - 2371648
Alignment:
| Q |
21 |
ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcata |
92 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2371577 |
ggttcattcgacattggttaaaacgtgtcatgatggctatttcgtgacacgattttagggacatgtggcata |
2371648 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 9953200 - 9953281
Alignment:
| Q |
21 |
ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
9953200 |
ggttcattcgacattggttaaaacgtgtcacgatagctatttcgtgacacgattttaggaacatgtggcacaagaaaagaaa |
9953281 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 5739037 - 5738967
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| |
|
|
| T |
5739037 |
agcaaaggatgaggttcattcgacattggttaaaacgcgtcacgatggctatttcgtgacacgattttagg |
5738967 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 23379654 - 23379580
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
|||| |||||| ||||||||| ||||| ||||||||||| ||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
23379654 |
gatgaggttcactcgacattgattaaaacgtgtcacgatagctatttcgtgacacgattctaggaacatgtggca |
23379580 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 23388993 - 23388919
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
|||| |||||| ||||||||| ||||| ||||||||||| ||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
23388993 |
gatgaggttcactcgacattgattaaaacgtgtcacgatagctatttcgtgacacgattctaggaacatgtggca |
23388919 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 43682640 - 43682483
Alignment:
| Q |
14 |
aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaaga |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
43682640 |
aggatgaggttcattcgacattggttaaaacgtgtcacgacggctatttcgtgacacgattttagggacatg--------------------cagcaaga |
43682561 |
T |
 |
| Q |
114 |
gaaaatatgatc-aaaagagcaaaaaaggaggtgtcaagaagcaatggatttaagaagtcatatgggcttatgtttgatc |
192 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
43682560 |
gaaaatatgatcaaaaagagcaaaacatgaggtgtcaagaagcaatggatttaagaatt--tataggcttatgtttgatc |
43682483 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 20520109 - 20520217
Alignment:
| Q |
14 |
aggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaatgaaagcaaga |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| | || ||| ||| ||| ||||||||||||||||| |
|
|
| T |
20520109 |
aggatgaggttcattcgacattggttaaaacgtgtcacaatggctatttcgtgacacgatttta-gaacgtgtagcacaagggaagaaatgaaagcaaga |
20520207 |
T |
 |
| Q |
114 |
gaaaatatga |
123 |
Q |
| |
|
||||| |||| |
|
|
| T |
20520208 |
gaaaacatga |
20520217 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 45156766 - 45156673
Alignment:
| Q |
9 |
agcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa |
102 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
45156766 |
agcacaggatgaggttcattcgacattgattaaaacgtgtcacaatggctatttcgtgacacgattttaggaacatgtggcacaaggaaagaaa |
45156673 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 25595525 - 25595439
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa |
102 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| ||| ||| ||||||| |
|
|
| T |
25595525 |
gatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacatgtcgcacaaggaaagaaa |
25595439 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 17895367 - 17895295
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17895367 |
gaagcacatgatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg |
17895295 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 25592340 - 25592254
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa |
102 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||| |||||| ||| ||| ||||||| |
|
|
| T |
25592340 |
gatgaggttcattcgacattggttaaaacgtgttacgatgactatttcgtgacacgattttaggaacatgtcgcacaaggaaagaaa |
25592254 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 33878074 - 33878009
Alignment:
| Q |
21 |
ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgt |
86 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
33878074 |
ggtttattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgt |
33878009 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 5540845 - 5540773
Alignment:
| Q |
7 |
gaagcataggatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
5540845 |
gaagcacaggatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacatgattttagg |
5540773 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 25228171 - 25228246
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcat |
91 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||| || |||||| |
|
|
| T |
25228171 |
gatgaggttcattcgacattggttaaaacgtgttacgatggttatttcgtgacacgattttagggatatatggcat |
25228246 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 18722151 - 18722065
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggcataagtaaagaaa |
102 |
Q |
| |
|
|||| ||||||||||| || ||||||| |||||||||||| |||||||| |||||||||||||| |||||| ||| ||| ||||||| |
|
|
| T |
18722151 |
gatgaggttcattcgatatcggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaacatgtcgcacaaggaaagaaa |
18722065 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 25229451 - 25229515
Alignment:
| Q |
86 |
tggcataagtaaagaaatgaaagcaagagaaaatatgatc-aaaagagcaaaaaaggaggtgtca |
149 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
25229451 |
tggcacaaggaaagaaatgaaagcaagagaaaatatgatcaaaaagagcaaaacaggaggtgtca |
25229515 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 10663175 - 10663233
Alignment:
| Q |
21 |
ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
10663175 |
ggttcaatcgacattggttaaaacgtgtcacgatggatatttcgtgacacgattttagg |
10663233 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 23612745 - 23612801
Alignment:
| Q |
23 |
ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
23612745 |
ttcattcgacattgtttaaaacgtgtcacaatggctatttcgtgacacgattttagg |
23612801 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0270 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: scaffold0270
Description:
Target: scaffold0270; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 895 - 826
Alignment:
| Q |
21 |
ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
895 |
ggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca |
826 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0270; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 4255 - 4186
Alignment:
| Q |
21 |
ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
4255 |
ggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca |
4186 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0270; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 11385 - 11316
Alignment:
| Q |
21 |
ggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagggacatgtggca |
90 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
11385 |
ggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaacatgtggca |
11316 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 61756 - 61819
Alignment:
| Q |
16 |
gatggggttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
61756 |
gatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg |
61819 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0381 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0381
Description:
Target: scaffold0381; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 6387 - 6331
Alignment:
| Q |
23 |
ttcattcgacattggttaaatcgtgtcacgatggctatttcgcgacacgattttagg |
79 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6387 |
ttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg |
6331 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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