View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15731_low_6 (Length: 341)
Name: NF15731_low_6
Description: NF15731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15731_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 17914796 - 17915118
Alignment:
| Q |
20 |
tgaaggttggtgtgattttgtagttaatgctaaggttgtggaggatgccatgaagaataaatggaattctggattgagaattaaacactctttgaagaaa |
119 |
Q |
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| T |
17914796 |
tgaaggttggtgtgattttgtagttaatgctaaggttgtggaggatgccatgaagaataaatggaattctggattgagaattaaacactctttgaagaaa |
17914895 |
T |
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| Q |
120 |
gacaattcttcaaagagatgctcaaattttgagggaacaatat---caatatctgctcctaatcgtccatggcgcatgcttgaggtatgtctt----tat |
212 |
Q |
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| T |
17914896 |
gacaattcttcaaagagatgctcaaattttgagggaacaatatctgctctatctgctcctaatcgtccatggcgcatgcttgaggtatgtctttatatat |
17914995 |
T |
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| Q |
213 |
atatgctattttcttttagtcttattatatctcaactgcacaatgttacatgtagtatttttgtttaatataggatatgttccaatgtgataatcttaaa |
312 |
Q |
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| T |
17914996 |
atatgctcttttcttttagtcttattatatctcaaccgcacaatgttacatatagtatttttgtttaatataggatatgttccaatgtgatcatcttaaa |
17915095 |
T |
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| Q |
313 |
cattaatgtcatttttcatctca |
335 |
Q |
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| T |
17915096 |
cattaatgtcatttttcatctca |
17915118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 17976370 - 17976185
Alignment:
| Q |
22 |
aaggttggtgtgattttgtagttaatgctaaggttgtggaggatgccatgaagaataaatggaattctggattgagaattaaacactctttgaagaaaga |
121 |
Q |
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| T |
17976370 |
aaggttggtgtaattttgttgttgatgccaaagttgtggaggatgcaatgaatattagttggagtcttggagtgagaattgaactttcttcgaagaatta |
17976271 |
T |
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| Q |
122 |
caattcttcaaagagatgctcaaattttgagggaacaatat---caatatctgctcctaatcgtccatggcgcatgcttgaggtat |
204 |
Q |
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| T |
17976270 |
cgattcttcaaagagatgctcaaaatttgagggaacaatatctgctctatctgctcctaattgtccatggcggatgcttgaggtat |
17976185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 8823755 - 8823932
Alignment:
| Q |
30 |
tgtgattttgtagttaatgctaaggttgtggaggatgccatgaagaataaatggaattctggattgagaattaaacactctttgaagaaagacaattctt |
129 |
Q |
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| T |
8823755 |
tgtgattttgtggtggatgccaaggttgttgaggatgcaatgaagattaactggaattgtggaatgaaaattaaattttctttgaagaatgaggattctt |
8823854 |
T |
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| Q |
130 |
caaagagatgctcaaattttgagggaacaatat---caatatctgctcctaatcgtccatggcgcatgcttgaggtat |
204 |
Q |
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|||||||||| ||| |||| |||| ||||||| | | || |||||||||||||||||||||||||||||||||| |
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| T |
8823855 |
caaagagatggtcagtttttaagggtacaatatccgctctctcagctcctaatcgtccatggcgcatgcttgaggtat |
8823932 |
T |
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