View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15732_high_10 (Length: 285)
Name: NF15732_high_10
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15732_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 31040657 - 31040392
Alignment:
| Q |
1 |
cttgttagaatcaaaggaaaggaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagccaactttttgtttgtttgtccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040657 |
cttgttagaatcaaaggaaaggaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagccaactttttgtttgtttgtccaa |
31040558 |
T |
|
| Q |
101 |
attcgatcgaagatgttactgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtatgagtctcttcatgtcttggttggttggttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040557 |
attcgatcgaagatgttactgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacattatgagtctcttcatgtcttggttggttggttgaa |
31040458 |
T |
|
| Q |
201 |
gacgactcgccagagaggtgctagggagtttgagaaattagtacttaactataaggatgagaaagg |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31040457 |
gacgactcgccagagaggtgctagggagtttgagaaattagtacttaactataaggatgagaaagg |
31040392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 31075824 - 31075657
Alignment:
| Q |
1 |
cttgttagaatcaaaggaaaggaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagccaactttttgtttgtttgtccaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||| || || | ||||||||||||| |
|
|
| T |
31075824 |
cttgttagaatcaaaggaagggaaggtttaactcctcttcatattgcttgtcaaaatggagaagttgaccttgtagctaatttcctatttgtttgtccaa |
31075725 |
T |
|
| Q |
101 |
attcgatcgaagatgttactgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtat |
168 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||| |||||||| |
|
|
| T |
31075724 |
attcgatccaagatgttactgtgaggggtgagactgcacttcatgttgctataaaaaataaacagtat |
31075657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 24508551 - 24508634
Alignment:
| Q |
88 |
tttgtttgtccaaattcgatcgaagatgttactgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtatgag |
171 |
Q |
| |
|
|||| ||||||| | || || ||||| || |||||||||||| |||||||| | |||||||||||| ||||| | ||||||||| |
|
|
| T |
24508551 |
tttgcttgtccagaatccattgaagacgtaactgtgaggggtaagactgcattgcatattgctgtgcaaaataaccagtatgag |
24508634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 30648315 - 30648368
Alignment:
| Q |
118 |
actgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtatgag |
171 |
Q |
| |
|
||||||||| | ||||||||||| |||||| |||| ||||||||||| |||||| |
|
|
| T |
30648315 |
actgtgaggcgcgagactgcactccatatttctgttaaaaatgaacaatatgag |
30648368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 17294055 - 17293897
Alignment:
| Q |
22 |
gaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagccaactttttgtttgtttgtccaaattcgatcgaagatgttactg |
121 |
Q |
| |
|
||||| ||||||||||||||| |||| | |||| ||| || |||| |||||||| || || | |||| |||||| ||||| || ||||||| |||| |
|
|
| T |
17294055 |
gaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaattactttttgcttgtccgaattccattcaagatgtgactg |
17293956 |
T |
|
| Q |
122 |
tgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtatgagtctcttcat |
180 |
Q |
| |
|
|| ||||||| |||||||| |||||||| ||||||||| || | | |||| |||||||| |
|
|
| T |
17293955 |
tggggggtgaaactgcactgcatattgcggtgaaaaataaaaactttgaggctcttcat |
17293897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 26087464 - 26087294
Alignment:
| Q |
1 |
cttgttagaatcaaaggaaaggaaggtttaactcctcttcatcttgcttgccaaagtggagaaattgaccttttagccaactttttgtttgtttgtccaa |
100 |
Q |
| |
|
||||||||| | |||||| ||||| |||||| |||||||| |||| | |||| |||||| ||||||||||||| || || | |||| ||||| | |
|
|
| T |
26087464 |
cttgttagagttcaaggaagagaaggcttaactgctcttcattttgcaagtcaaattggagaggttgaccttttagctaaattcctccttgtatgtccta |
26087365 |
T |
|
| Q |
101 |
attcgatcgaagatgttactgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacagtatgag |
171 |
Q |
| |
|
|||| || |||||| ||||||||| ||||||| ||| | ||||||||| | || |||||||| |||||| |
|
|
| T |
26087364 |
attccattagagatgtgactgtgaggtgtgagaccgcattgcatattgctatcaagaatgaacaatatgag |
26087294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University