View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15732_high_12 (Length: 237)

Name: NF15732_high_12
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15732_high_12
NF15732_high_12
[»] chr1 (10 HSPs)
chr1 (1-136)||(30294574-30294709)
chr1 (131-221)||(30294293-30294380)
chr1 (96-212)||(46396399-46396514)
chr1 (73-207)||(37245077-37245210)
chr1 (144-212)||(27850651-27850719)
chr1 (96-205)||(1282390-1282495)
chr1 (96-205)||(1283421-1283526)
chr1 (93-212)||(42773403-42773522)
chr1 (139-204)||(5200869-5200934)
chr1 (159-221)||(21487318-21487380)
[»] chr5 (6 HSPs)
chr5 (73-212)||(15727076-15727216)
chr5 (89-212)||(15810921-15811044)
chr5 (73-214)||(38351771-38351912)
chr5 (146-221)||(4930796-4930871)
chr5 (119-193)||(22399320-22399394)
chr5 (135-212)||(29368696-29368773)
[»] chr6 (3 HSPs)
chr6 (135-221)||(33106700-33106786)
chr6 (135-212)||(11769753-11769830)
chr6 (73-203)||(6822743-6822872)
[»] chr4 (6 HSPs)
chr4 (93-214)||(13029004-13029122)
chr4 (77-212)||(22087558-22087691)
chr4 (134-212)||(13035677-13035755)
chr4 (96-212)||(26333020-26333134)
chr4 (135-180)||(35747818-35747863)
chr4 (96-205)||(47551849-47551957)
[»] chr8 (6 HSPs)
chr8 (96-212)||(1336307-1336424)
chr8 (93-212)||(14539341-14539458)
chr8 (101-205)||(16340512-16340615)
chr8 (129-172)||(40381833-40381876)
chr8 (143-212)||(3310746-3310815)
chr8 (136-207)||(42163855-42163924)
[»] chr3 (11 HSPs)
chr3 (135-221)||(1902001-1902087)
chr3 (135-221)||(1911447-1911533)
chr3 (92-177)||(7729590-7729675)
chr3 (73-173)||(31339736-31339837)
chr3 (119-212)||(44441805-44441897)
chr3 (135-193)||(10480603-10480661)
chr3 (135-207)||(11027077-11027149)
chr3 (106-221)||(35864040-35864154)
chr3 (135-193)||(34962443-34962501)
chr3 (154-213)||(55142490-55142549)
chr3 (135-212)||(21984149-21984226)
[»] chr7 (3 HSPs)
chr7 (120-207)||(46232349-46232432)
chr7 (135-212)||(23756465-23756542)
chr7 (68-207)||(7439960-7440098)
[»] chr2 (3 HSPs)
chr2 (121-219)||(42071547-42071644)
chr2 (96-173)||(42530778-42530855)
chr2 (147-221)||(28528939-28529013)
[»] scaffold0245 (1 HSPs)
scaffold0245 (96-205)||(8070-8175)
[»] scaffold0229 (1 HSPs)
scaffold0229 (96-205)||(8398-8503)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 30294709 - 30294574
Alignment:
Q  1 taatattaaataattgaatgagagtgtttgctaataaaacatataaaaatccaatttcccaccttctgacaaggacggatgtatgttgatccatgtgtgc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||     
T  30294709 taatattaaataattgaatgagaatgtttgctaataaaacatataaaaatccaatttcccaccttctgacagggatggatgtatgttgatccatgtgtgt 30294610  T
Q  101 gcttgtgccaacactaaatttttagaaactattatt 136  Q
    ||||||||| ||||||||||||||||||||||||||    
T  30294609 gcttgtgcctacactaaatttttagaaactattatt 30294574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 30294380 - 30294293
Alignment:
Q  131 attatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttggtctacacat 221  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||   ||||||||||||||||||| |||||||||    
T  30294380 attatttttagtactataatgtatcaatagttgacattttaactacataacctacactt---ataaattatttctcttttgatctacacat 30294293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 46396399 - 46396514
Alignment:
Q  96 tgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcata 195  Q
    |||| ||||||||| |||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||||   ||||||||||| |    
T  46396399 tgtgggcttgtgcccacacaaaatttttagaaacaatt-tttttggtagtataatgtatcaatagttgacattttgatcacatggatcacacttatcaga 46396497  T
Q  196 aattatttctcttttgg 212  Q
    ||| |||||||| ||||    
T  46396498 aatcatttctctcttgg 46396514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 37245210 - 37245077
Alignment:
Q  73 ggacggatgtatgttgatccatgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttga 172  Q
    ||||||||| |||||  || ||||||  ||||||||| ||||  || |||||||||||  | |||||||||||||||| |||||||| ||||||||||||    
T  37245210 ggacggatgcatgttactctatgtgtaggcttgtgcctacacacaaattttagaaacttat-tttttagtagtataatatatcaatatttgacattttga 37245112  T
Q  173 ctacatgacccacacttatcataaattatttctct 207  Q
      |||||| ||||||||||||||||| ||||||||    
T  37245111 tcacatgatccacacttatcataaatcatttctct 37245077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 27850719 - 27850651
Alignment:
Q  144 gtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttgg 212  Q
    ||||||| ||||||||||| | |||||||| |||||  |||||||||||||||||||||||||||||||    
T  27850719 gtataatatatcaatagtttatattttgaccacatgtaccacacttatcataaattatttctcttttgg 27850651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 1282495 - 1282390
Alignment:
Q  96 tgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcata 195  Q
    |||| ||||||||| ||||  ||||||||||||| ||| ||||| |||||||||||||| ||||||||||| |||||  ||||||  ||||||||||| |    
T  1282495 tgtgggcttgtgcccacac--aatttttagaaacaatt-tttttggtagtataatgtattaatagttgaca-tttgatcacatgaatcacacttatcaca 1282400  T
Q  196 aattatttct 205  Q
    ||| ||||||    
T  1282399 aatcatttct 1282390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 1283526 - 1283421
Alignment:
Q  96 tgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcata 195  Q
    |||| ||||||||| ||||  ||||||||||||| ||| ||||| |||||||||||||| ||||||||||| |||||  ||||||  ||||||||||| |    
T  1283526 tgtgggcttgtgcccacac--aatttttagaaacaatt-tttttggtagtataatgtattaatagttgaca-tttgatcacatgaatcacacttatcaca 1283431  T
Q  196 aattatttct 205  Q
    ||| ||||||    
T  1283430 aatcatttct 1283421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 42773522 - 42773403
Alignment:
Q  93 atgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatc 192  Q
    ||||||| || |||||| |||| ||| ||||||||||  || || | |||||||||||||| |||||||||| |||||||| ||||  || || ||| |     
T  42773522 atgtgtgggcatgtgccgacacaaaaattttagaaaccttttttatgagtagtataatgtaccaatagttgatattttgaccacatagcctactcttctt 42773423  T
Q  193 ataaattatttctcttttgg 212  Q
    | |||| |||||||||||||    
T  42773422 acaaatcatttctcttttgg 42773403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 5200934 - 5200869
Alignment:
Q  139 tagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttc 204  Q
    ||||||||||||  |||||||||||| ||||| || ||| ||||||||||||||| ||||| ||||    
T  5200934 tagtagtataattaatcaatagttgatattttaaccacaagacccacacttatcacaaattctttc 5200869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 21487318 - 21487380
Alignment:
Q  159 agttgacattttgactacatgacccacacttatcataaattatttctcttttggtctacacat 221  Q
    |||||| |||||||| |||||  |||||||| ||| |||| ||||||||||||||| ||||||    
T  21487318 agttgatattttgaccacatggtccacacttctcacaaatcatttctcttttggtccacacat 21487380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 212
Target Start/End: Complemental strand, 15727216 - 15727076
Alignment:
Q  73 ggacggatgtatgttgatccatgtgtgcgcttgtgccaacactaaattttta-gaaactattatttttagtagtataatgtatcaatagttgacattttg 171  Q
    ||||||||||||||| |||||| |||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15727216 ggacggatgtatgttcatccatatgtgggcttgtgcctacactaaatttttaagaaactattatttttagtagtataatgtatcaatagttgacattttg 15727117  T
Q  172 actacatgacccacacttatcataaattatttctcttttgg 212  Q
    |  | | || ||||| |||||| ||||||||| | ||||||    
T  15727116 atcatacgatccacatttatcacaaattatttgtattttgg 15727076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 15811044 - 15810921
Alignment:
Q  89 atccatgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacact 188  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |  | |||||    
T  15811044 atccatgtgtgggcttgtgcctacattaaatttttagaaactattatttttagtagtataatgtatcaatagttcacattttgaccacacggtctacact 15810945  T
Q  189 tatcataaattatttctcttttgg 212  Q
    ||||| ||||||||| ||||||||    
T  15810944 tatcacaaattatttttcttttgg 15810921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 38351912 - 38351771
Alignment:
Q  73 ggacggatgtatgttgatccatgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttga 172  Q
    ||||||||| ||||||   |||||||| |||||||||||||| |||  |||||||||  || ||||||||||||||||||| |||||||| ||||||| |    
T  38351912 ggacggatgcatgttggcacatgtgtgggcttgtgccaacacaaaaaatttagaaacacttttttttagtagtataatgtaccaatagttaacattttta 38351813  T
Q  173 ctacatgacccacacttatcataaattatttctcttttggtc 214  Q
      | || ||||| || ||| | ||||||||||||| ||||||    
T  38351812 tcatataacccatacctattacaaattatttctctcttggtc 38351771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 4930871 - 4930796
Alignment:
Q  146 ataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttggtctacacat 221  Q
    ||||||| ||||||||||| |||||||| |||||||| |||||| ||| |||| |||||| | |||||| ||||||    
T  4930871 ataatgtttcaatagttgagattttgaccacatgacctacacttctcacaaatcatttctttcttggtccacacat 4930796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 22399320 - 22399394
Alignment:
Q  119 tttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatca 193  Q
    ||||||||||| ||| ||||  |||||||||| |||||||||||||||||||||  |||||  | ||||||||||    
T  22399320 tttttagaaacaatttttttgggtagtataatatatcaatagttgacattttgatcacatggactacacttatca 22399394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 29368773 - 29368696
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttgg 212  Q
    |||||||||||||||| |||||||| |||| ||||| ||  | ||||||||| |||| | |||| |||||||| ||||    
T  29368773 tttttagtagtataatatatcaataattgatattttaacatcttgacccacatttattaaaaatcatttctctcttgg 29368696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 33106700 - 33106786
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttggtctacacat 221  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||  ||||||||||| ||||||||||||| |||| ||||||||    
T  33106700 ttttaagtagtataatgtatcaatagttgacattttgaccatatgattcacacttatcacaaattatttctctcttggcctacacat 33106786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 11769753 - 11769830
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttgg 212  Q
    |||||||||||||||||||| ||||||| |||||||||  | ||| ||||||||| ||| |||| |||||||||||||    
T  11769753 tttttagtagtataatgtattaatagttaacattttgatcatatggcccacacttctcacaaatcatttctcttttgg 11769830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 6822872 - 6822743
Alignment:
Q  73 ggacggatgtatgttgatccatgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataat---gtatcaatagttgacattt 169  Q
    |||||||||||||||| |  ||||||| | || |||| |||| ||||||||| ||||| ||  |||||||||||||||   ||||||||| |||||||||    
T  6822872 ggacggatgtatgttgtt--atgtgtgggtttatgccgacacgaaatttttaaaaactttt--ttttagtagtataataatgtatcaataattgacattt 6822777  T
Q  170 tgactacatgacccacacttatcataaattattt 203  Q
    |||  |||| | ||||| |||||| |||| ||||    
T  6822776 tgatcacataatccacatttatcacaaatcattt 6822743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 13029122 - 13029004
Alignment:
Q  93 atgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatc 192  Q
    ||||||| ||||||||| |||| ||| |||||||||||  |||||| ||||||||||||||  |||||||||||||||||| |||||| |||||||||||    
T  13029122 atgtgtgggcttgtgcctacacaaaaattttagaaact--tatttt-agtagtataatgtacgaatagttgacattttgaccacatgatccacacttatc 13029026  T
Q  193 ataaattatttctcttttggtc 214  Q
    | |||| |||| ||| ||||||    
T  13029025 acaaatcatttatctcttggtc 13029004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 22087558 - 22087691
Alignment:
Q  77 ggatgtatgttgatccatgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactac 176  Q
    ||||| |||||| || ||||||||| ||||||   ||| ||||||||| ||||  ||  ||||||||||  ||| || ||||||||||||||||||| ||    
T  22087558 ggatgcatgttgttctatgtgtgcgtttgtgcttgcacaaaatttttaaaaaccttt--ttttagtagtgcaatataccaatagttgacattttgaccac 22087655  T
Q  177 atgacccacacttatcataaattatttctcttttgg 212  Q
    ||||||||||||||||| | || |||||||||||||    
T  22087656 atgacccacacttatcacatatcatttctcttttgg 22087691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 13035755 - 13035677
Alignment:
Q  134 atttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttgg 212  Q
    ||||| ||||||||||||||  |||||||||||||||||| ||| ||||||||||||||| |||| |||| ||| ||||    
T  13035755 attttaagtagtataatgtaggaatagttgacattttgaccacaagacccacacttatcacaaatcatttatctcttgg 13035677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 26333020 - 26333134
Alignment:
Q  96 tgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcata 195  Q
    |||| ||||||| | |||| |||||||||||||| ||| ||||  ||||||||||||||||||||||||| ||||||| | | |   |||||||| || |    
T  26333020 tgtgggcttgtggccacacaaaatttttagaaacaattttttt--gtagtataatgtatcaatagttgacgttttgaccataaggatcacacttaccaca 26333117  T
Q  196 aattatttctcttttgg 212  Q
    |||||||||||| ||||    
T  26333118 aattatttctctcttgg 26333134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 35747863 - 35747818
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatga 180  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||    
T  35747863 tttttagtaatataatgtatcaatagttgacattttgattacatga 35747818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 47551849 - 47551957
Alignment:
Q  96 tgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcata 195  Q
    |||| ||||||||| |||| || ||||||||||| ||| ||||| ||  |||||||||  ||||||||||||||| |  |||||| |||||||||||| |    
T  47551849 tgtgggcttgtgcccacacaaagtttttagaaaccatt-tttttggttatataatgtactaatagttgacattttaatcacatgaaccacacttatcaca 47551947  T
Q  196 aattatttct 205  Q
    ||| ||||||    
T  47551948 aatcatttct 47551957  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 1336424 - 1336307
Alignment:
Q  96 tgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataat-gtatcaatagttgacattttgactacatgacccacacttatcat 194  Q
    |||| ||||||||| |||| || ||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||  |||||| ||||||||||||     
T  1336424 tgtgggcttgtgcccacacaaagtttttagaaacaattttttttggtagtataattgtatcaatagttgacattttgatcacatgaaccacacttatcac 1336325  T
Q  195 aaattatttctcttttgg 212  Q
    |||  |||||||| ||||    
T  1336324 aaaacatttctctcttgg 1336307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 14539341 - 14539458
Alignment:
Q  93 atgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatc 192  Q
    ||||||| ||||||||| |||| ||||||||||||||| ||  |||||||||||||||||| | ||| |||||||||| | ||||||  ||||||||| |    
T  14539341 atgtgtgggcttgtgcctacacaaaatttttagaaactttt--ttttagtagtataatgtacccataattgacattttaattacatggtccacacttaac 14539438  T
Q  193 ataaattatttctcttttgg 212  Q
    | |||| |||||||| ||||    
T  14539439 acaaatcatttctctcttgg 14539458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 16340615 - 16340512
Alignment:
Q  101 gcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaatta 200  Q
    ||||||| | |||| || ||||||||||  ||| ||||||||||||||||||||||||||||||||||||  | |||||  | |||||||||| |||| |    
T  16340615 gcttgtggctacacaaagtttttagaaataatt-tttttagtagtataatgtatcaatagttgacattttagccacatggtctacacttatcacaaataa 16340517  T
Q  201 tttct 205  Q
    |||||    
T  16340516 tttct 16340512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 40381876 - 40381833
Alignment:
Q  129 ctattatttttagtagtataatgtatcaatagttgacattttga 172  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||    
T  40381876 ctattttttttagtagtataatgtaccaatagttgatattttga 40381833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 3310815 - 3310746
Alignment:
Q  143 agtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttgg 212  Q
    |||||||||| |  ||| |||||||||||||||||| |  | ||||||||  ||||||||||||||||||    
T  3310815 agtataatgtgtatataattgacattttgactacataattcccacttatccgaaattatttctcttttgg 3310746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 42163855 - 42163924
Alignment:
Q  136 ttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctct 207  Q
    |||||||||||| ||||||  ||||||||||||||||| |||||||  ||| || ||| |||| ||||||||    
T  42163855 ttttagtagtattatgtat--atagttgacattttgaccacatgacttacatttctcacaaatcatttctct 42163924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 1902001 - 1902087
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttggtctacacat 221  Q
    |||||| |||||||||| |  ||||||||| |||||||  ||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  1902001 tttttaatagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctcttttggtctacacat 1902087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 1911447 - 1911533
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttggtctacacat 221  Q
    |||||| |||||||||| |  ||||||||| |||||||  ||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  1911447 tttttaatagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctcttttggtctacacat 1911533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 7729590 - 7729675
Alignment:
Q  92 catgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactaca 177  Q
    |||||||| ||||||||| |||| ||| ||||||||||  |  |||||||| ||||||||||||||||||||||| ||||||||||    
T  7729590 catgtgtgggcttgtgcctacacaaaaattttagaaacactattttttagttgtataatgtatcaatagttgacagtttgactaca 7729675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 31339736 - 31339837
Alignment:
Q  73 ggacggatgtatgttgatccatgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtat---aatgtatcaatagttgacattt 169  Q
    |||||||||||||||| | |||||||| ||||||||| |||| ||||||||||||||  |  |||||||||||||    |||||||||||||||| ||||    
T  31339736 ggacggatgtatgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaacact--tttttagtagtatcaatatgtatcaatagttgatattt 31339833  T
Q  170 tgac 173  Q
    ||||    
T  31339834 tgac 31339837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 44441897 - 44441805
Alignment:
Q  119 tttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttgg 212  Q
    ||||||||||| ||| || || ||||||||||||||||||||||||||||||||  |||||   ||||||||||| |||| |||||||| ||||    
T  44441897 tttttagaaacaatt-ttattggtagtataatgtatcaatagttgacattttgatcacatggatcacacttatcacaaatcatttctctcttgg 44441805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 10480661 - 10480603
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatca 193  Q
    |||||| ||||||||| |||| ||||||||||||||||| |||||| ||||||||||||    
T  10480661 tttttaatagtataatatatctatagttgacattttgaccacatgatccacacttatca 10480603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 11027077 - 11027149
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctct 207  Q
    ||||||||| ||||| ||||||||||||||||| ||||| ||||||| |||| |||| | ||| |||||||||    
T  11027077 tttttagtaatataacgtatcaatagttgacatattgacaacatgactcacatttattacaaactatttctct 11027149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 35864040 - 35864154
Alignment:
Q  106 tgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttct 205  Q
    |||| |||| ||| ||| ||||||| || ||||| || ||||||||||  ||||||||| ||||| || ||||  ||| ||||||||| |||| ||||||    
T  35864040 tgccgacacaaaaatttcagaaactttttttttt-gttgtataatgtactaatagttgatatttttaccacattgccctcacttatcacaaatcatttct 35864138  T
Q  206 cttttggtctacacat 221  Q
    ||||||| ||||||||    
T  35864139 cttttggcctacacat 35864154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 34962501 - 34962443
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatca 193  Q
    |||||||||||||||| ||||||| ||||||| |||||   ||||||||||||||||||    
T  34962501 tttttagtagtataatatatcaatggttgacaatttgatcgcatgacccacacttatca 34962443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 55142549 - 55142490
Alignment:
Q  154 tcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttggt 213  Q
    ||||||||||  ||||| |||| |||  ||||||||||||||||| ||||||||||||||    
T  55142549 tcaatagttggaattttaactatatggtccacacttatcataaatcatttctcttttggt 55142490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 21984149 - 21984226
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttgg 212  Q
    |||||||||||||||| |||||||| |||| ||||| ||  | ||||||||| |||| | |||| |||||||| ||||    
T  21984149 tttttagtagtataatatatcaataattgatattttaacatcttgacccacatttattaaaaatcatttctctcttgg 21984226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 46232349 - 46232432
Alignment:
Q  120 ttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctct 207  Q
    ||||||||||| || |||||||||||||   |||  |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  46232349 ttttagaaactttt-tttttagtagtat---gtactaatagttgacattttgactacatgacccacacttatcacaaatcatttctct 46232432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 23756465 - 23756542
Alignment:
Q  135 tttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttgg 212  Q
    ||||||||||||||||||| |||  |||||||||||||  | ||| ||||||||||  | |||| |||||||||||||    
T  23756465 tttttagtagtataatgtaccaaccgttgacattttgatgagatggcccacacttaatacaaatcatttctcttttgg 23756542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 7439960 - 7440098
Alignment:
Q  68 gacaaggacggatgtatgttgatccatgtgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacat 167  Q
    |||| ||||| ||||||||||   | |||||| ||||||||| |||| || |||||| ||  |||| ||||||||| ||||  ||| ||||||||  |||    
T  7439960 gacagggacgaatgtatgttgtggcttgtgtgggcttgtgcctacacaaagtttttaaaatttatt-tttttagtaatatagcgtaccaatagttatcat 7440058  T
Q  168 tttgactacatgacccacacttatcataaattatttctct 207  Q
    ||||||  |||| ||||||||||||| || || |||||||    
T  7440059 tttgacctcatggcccacacttatcacaagttctttctct 7440098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 42071644 - 42071547
Alignment:
Q  121 tttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttggtctacac 219  Q
    |||||||||| || |||||| ||||||||||||  |||||||| ||||||||  |||||| |||||||||||| |||| |||||||| |||||| ||||    
T  42071644 tttagaaactttt-tttttaatagtataatgtactaatagttggcattttgatcacatgatccacacttatcacaaatcatttctctcttggtccacac 42071547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 42530778 - 42530855
Alignment:
Q  96 tgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtata--atgtatcaatagttgacattttgac 173  Q
    |||| ||||||||| |||| |||||||||||||| |||  |||||||||||||  |||||||||||||||||||||||||    
T  42530778 tgtgggcttgtgcccacacaaaatttttagaaaccatt--ttttagtagtatataatgtatcaatagttgacattttgac 42530855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 28528939 - 28529013
Alignment:
Q  147 taatgtatcaatagttgacattttgactacatgacccacacttatcataaattatttctcttttggtctacacat 221  Q
    ||||||| ||||| ||||||||||||  |||||  |||||||||||| |||| ||||||||||||||| ||||||    
T  28528939 taatgtaccaataattgacattttgatcacatggtccacacttatcagaaataatttctcttttggtccacacat 28529013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 8175 - 8070
Alignment:
Q  96 tgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcata 195  Q
    |||| ||||||||| ||||  ||||||||||||| ||| ||||| |||||||||||||| ||||||||||| |||||  ||||||  ||||||||||| |    
T  8175 tgtgggcttgtgcccacac--aatttttagaaacaatt-tttttggtagtataatgtattaatagttgaca-tttgatcacatgaatcacacttatcaca 8080  T
Q  196 aattatttct 205  Q
    ||| ||||||    
T  8079 aatcatttct 8070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 8503 - 8398
Alignment:
Q  96 tgtgcgcttgtgccaacactaaatttttagaaactattatttttagtagtataatgtatcaatagttgacattttgactacatgacccacacttatcata 195  Q
    |||| ||||||||| ||||  ||||||||||||| ||| ||||| |||||||||||||| ||||||||||| |||||  ||||||  ||||||||||| |    
T  8503 tgtgggcttgtgcccacac--aatttttagaaacaatt-tttttggtagtataatgtattaatagttgaca-tttgatcacatgaatcacacttatcaca 8408  T
Q  196 aattatttct 205  Q
    ||| ||||||    
T  8407 aatcatttct 8398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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