View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15732_high_3 (Length: 570)
Name: NF15732_high_3
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15732_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 16 - 555
Target Start/End: Complemental strand, 7969955 - 7969413
Alignment:
| Q |
16 |
cataggacttttgttccttagatacaaagcttttgtttcttctggactcaaagtcatgttgttctttcttcctcgttcatgacgtggagtgtcttgccac |
115 |
Q |
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| T |
7969955 |
cataggacttttgttccttagatacaaagcttttgtttcttctggactcaaagtcatgttgttctttcttcctcgttcatgacgtggagtgtcttgccac |
7969856 |
T |
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| Q |
116 |
tccgtctctgtgtctgatggttcatatccgctacgtcccttctttgtagagaatacggcacttggagttagaggaaataggttatccagttgagtcttct |
215 |
Q |
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| T |
7969855 |
tccgtctctgtgtctgatggttcatatccgctacgtcccttctttgtagagaatacggcacttggagttagaggaaataggttatccagttgagtcttct |
7969756 |
T |
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| Q |
216 |
ccattagagagaatggttttgagattgattgcaatcaagatgagctaatgaaacttctgagaaacaaaagtttgtgacaatgccaaataataaaaaagag |
315 |
Q |
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| T |
7969755 |
ccattagagagaatggttttgagattgattgcaatcaaaatgagctaatgaaacttctgagaaacaaaagtttgtgacaatgccaaataataaaaaagag |
7969656 |
T |
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| Q |
316 |
gg--ttgagaatagagatgcgatggtttctaaatgatatgcattggtgatgataatgatgacaacgatgtttgatgnnnnnnntgtgtcttttggtcttt |
413 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7969655 |
ggttttgagaatagagatgcgatggtttctaaatgatatgcattggtgatgataatgatgacaacgatgtttgatgaaaaaaatgtgtcttttggtcttt |
7969556 |
T |
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| Q |
414 |
catatttttggcaattagtatatgttattgtccttttcctttatggttcggacagtgtagattacatgggaatttcggctca-ttttgtcaggtgccagc |
512 |
Q |
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| T |
7969555 |
catatttttggcaattagtatatgttattgtccttttcctttatggttcggacagtgtagattacatgggaatttcggctcatttttgtcaggtgccagc |
7969456 |
T |
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| Q |
513 |
atttgctaaggaaactacaaacttggttattaacgttctattt |
555 |
Q |
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| T |
7969455 |
atttgctaaggaaactacaaacttggttattaacgttctattt |
7969413 |
T |
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