View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15732_low_10 (Length: 292)
Name: NF15732_low_10
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15732_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 51214285 - 51214549
Alignment:
| Q |
9 |
agcacagacgcaaaggtttgtgccttacacaatgtgcttcaattgtgtcacaatgcatttttgtctctaaatttatttagtacatattttgtttctatat |
108 |
Q |
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| T |
51214285 |
agcacagacgcaaaggtttgtgccttacacaatgtgcttcaattgcgtcacaatgcatttttgtctctaaatttatttagtacatattttgtttctatat |
51214384 |
T |
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| Q |
109 |
gaaatttgtactaatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaactatacgaggaagcaagtcaagtagcaaacgatgcagt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
51214385 |
gaaatttgtactaatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaactatacgaggaagcaagtcaagtagcgaacgacgcagt |
51214484 |
T |
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| Q |
209 |
agggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaaga |
273 |
Q |
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| T |
51214485 |
agggaatatcagaacagtttctgctttctgtgccgaagagaaagtgatggaattataccagaaga |
51214549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 29935578 - 29935477
Alignment:
| Q |
164 |
acagaaactatacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaatta |
263 |
Q |
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| T |
29935578 |
acagaaattgtacgaggaagcaagtcaagtggcaaatgatgcggtagggtgtataagaacagtttcttctttctgtgctgaagagaaggtgatggaatta |
29935479 |
T |
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| Q |
264 |
ta |
265 |
Q |
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|| |
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| T |
29935478 |
ta |
29935477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 51201393 - 51201481
Alignment:
| Q |
177 |
gaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattata |
265 |
Q |
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| T |
51201393 |
gaggaagcaagtcaagtggcgaatgatgcagtagggagtataagaacagttgcttctttctgttctgaagagaaggtgatggaattata |
51201481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 51147431 - 51147532
Alignment:
| Q |
164 |
acagaaactatacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaatta |
263 |
Q |
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| T |
51147431 |
acagaaattgtacgaggaagcaagtcaagtggcaaatgatgctgtagggagtataagaactgtttcctctttttgtgctgaggagaaggtgatggaatta |
51147530 |
T |
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| Q |
264 |
ta |
265 |
Q |
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|| |
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| T |
51147531 |
ta |
51147532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 51158602 - 51158688
Alignment:
| Q |
180 |
gaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattatac |
266 |
Q |
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| T |
51158602 |
gaagcaagtcaagtggcaaatgatgctgtagggagcataagaacagttgcttctttttgtgctgaaaagaaggtaatggaattatac |
51158688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 273
Target Start/End: Complemental strand, 49735760 - 49735560
Alignment:
| Q |
74 |
tctaaatttatttagtacatattttg-tttctatatgaaatttgtactaatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaact |
172 |
Q |
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|||||||||||||||||||||||||| ||| ||||| |||| |||||||||| |||||||||||||||| |||||||||| |||||||| |||||||| |
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| T |
49735760 |
tctaaatttatttagtacatattttgctttatatatttaattagtactaatctccatttgacatgatgttactatgctctatatatgtttgacagaaaca |
49735661 |
T |
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| Q |
173 |
atacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattataccagaag |
272 |
Q |
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| T |
49735660 |
gtatgaggaagcaagtcaagtagcgaatgatgcagtagggaatatcagaacagtttccgctttctgtgctgaagagaaggtgatggagttataccaaaag |
49735561 |
T |
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| Q |
273 |
a |
273 |
Q |
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| T |
49735560 |
a |
49735560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 36287746 - 36287837
Alignment:
| Q |
177 |
gaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattatacca |
268 |
Q |
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||||||||||||||||| ||||| ||||| || | || || ||||||||| || |||||||||| ||||||||||| ||||| || ||||| |
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| T |
36287746 |
gaggaagcaagtcaagtggcaaatgatgctgtgagtaacattagaacagttgcttctttctgtgctgaagagaaggttatggacttgtacca |
36287837 |
T |
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