View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15732_low_13 (Length: 258)
Name: NF15732_low_13
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15732_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 574140 - 574382
Alignment:
| Q |
1 |
attgttacaattctgccgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatgagcgtgtcgcgatgtttagcatttttggtataaatata |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
574140 |
attgttacaattctgctgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatgagcgtgtcgcgatgtttagcatttttggtataaatata |
574239 |
T |
|
| Q |
101 |
atacaannnnnnnnnnnnnatgagcaatgattgggaaaaacactaagaaaccaaggtagctgaacaaaaattcaggatctgaaaaagaggaagatggtag |
200 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
574240 |
atacaattttttttt----atgagcaatggatgggaaaaacactaagaaaccaaggtagctaaacaaaaattcaggatctgaaaaagagggagatggtag |
574335 |
T |
|
| Q |
201 |
ggactaggtaggttgaagacaagttataaagatatagtgtagactga |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
574336 |
ggactaggtaggttgaagacaagttataaagatatagtgtagactga |
574382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 49245176 - 49245297
Alignment:
| Q |
120 |
atgagcaatgattgggaaaaacactaagaaaccaaggtagctgaacaaaaattcaggatctgaaaaagaggaagatggtagggactaggtaggttgaaga |
219 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
49245176 |
atgagcaatggatgggaaaaacactaagaaaccaaggtagttaaacaaaaattcag-atctgaaaaagagggagatggtagggactacgtacgttgaaga |
49245274 |
T |
|
| Q |
220 |
caagttataaagatatagtgtag |
242 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
49245275 |
caagttataaagatataatgtag |
49245297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2471838 - 2471925
Alignment:
| Q |
1 |
attgttacaattctgccgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatgagcgtgtcgcgatgtttagcatttttg |
89 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2471838 |
attgttacaattctgct-tcatgaaagatgaattcagtacaattcgtgaaatactcgtgatgagcgtgtcgtgatgtttagcatttttg |
2471925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8981068 - 8980981
Alignment:
| Q |
1 |
attgttacaattctgccgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatgagcgtgtcgcgatgtttagcatttttg |
89 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8981068 |
attgttacaattctgct-tcatgaaagatgaattcagtacaattcgtgaaatactcgtgatgagcgtgtcgtgatgtttagcatttttg |
8980981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27135037 - 27135124
Alignment:
| Q |
1 |
attgttacaattctgccgtcatgaaagatgagttcagtacaattcgtgaaatactcgtgatgagcgtgtcgcgatgtttagcatttttg |
89 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27135037 |
attgttacaattctgct-tcatgaaagatgaattcagtacaattcgtgaaatactcgtgatgagcgtgtcgtgatgtttagcatttttg |
27135124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University