View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15732_low_14 (Length: 254)
Name: NF15732_low_14
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15732_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 9994490 - 9994246
Alignment:
| Q |
1 |
catcaggtgtgctcttcttggtactttttcgaacatcccggttattagtgaatcggctttccttcattccctacttaatataggagggatccagtggcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9994490 |
catcaggtgtgctcttcttggtactttttcgaacatcccggttattagtgaatcggctttccttcattccctacttaatataggagggatccagtggcca |
9994391 |
T |
|
| Q |
101 |
ttttagg---tagtcaagagcatatttgtaaactatatgtgttgtatataaagagataagggttattagtggttttatataaagagataagggttattga |
197 |
Q |
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| T |
9994390 |
ttttaggaagtagtcaagagcatatttgtaaactatatgtgttgtatataaagagataagggttattagtggttttatataaagagataaaggttattga |
9994291 |
T |
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| Q |
198 |
aattctgataaggattctaacaattgtgctgttgtttttcttctc |
242 |
Q |
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| T |
9994290 |
aattctgataaggattctaacaattgtgctgttgtttttcttctc |
9994246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 38118312 - 38118448
Alignment:
| Q |
1 |
catcaggtgtgctcttcttggtactttttcgaacatcccggttattagtgaatcggctttccttcattccctacttaatataggagggatccagtggcca |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
38118312 |
catcaggtgtgctcttcttggtacattttcgaacatccctgttattagcgaatcagctttccttcattccctacttaatataggagggttccagcggccg |
38118411 |
T |
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| Q |
101 |
ttttag---gtagtcaagagcatatttgtaaactata |
134 |
Q |
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| T |
38118412 |
ttttaggaagtagtcaagggcttatttgtaaactata |
38118448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 38112355 - 38112485
Alignment:
| Q |
1 |
catcaggtgtgctcttcttggtactttttcgaacatcccggttattagtgaatcggctttccttcattccctacttaatataggagggatccagtggcca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| ||||||||| |||| |||||||||||||| ||||| |||| |
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| T |
38112355 |
catcaggtgtgctcttcttggtacattttcgaacattcctgttattagtgaatcagctctccttcattgcctatttaatataggagggttccagcggccg |
38112454 |
T |
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| Q |
101 |
ttttag---gtagtcaagagcatatttgtaa |
128 |
Q |
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|||||| |||||||||||||||||||||| |
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| T |
38112455 |
ttttaggaagtagtcaagagcatatttgtaa |
38112485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 38118572 - 38118637
Alignment:
| Q |
172 |
ttatataaagagataagggttattgaaattctgataaggattctaacaattgtgctgttgtttttctt |
239 |
Q |
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||||||||||| ||||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||| |
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| T |
38118572 |
ttatataaagatataag--ttattgaaattctgatacggattctaataattgggctgttgtttttctt |
38118637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 38112618 - 38112685
Alignment:
| Q |
172 |
ttatataaagagataagggttattgaaattctgataaggattctaacaattgtgctgttgtttttctt |
239 |
Q |
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||||||||| | ||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||| |
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| T |
38112618 |
ttatataaatatataagggatattgaaattctgatatggattctaataattgttgtgttgtttttctt |
38112685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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