View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15732_low_2 (Length: 606)
Name: NF15732_low_2
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15732_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 22029679 - 22029576
Alignment:
| Q |
195 |
taccgcagcattgttaatagccaatatagcttcctgagaaacacgtaaatcgctaatttcaccctttaacatcgtcctaattcgattcataggaaacaca |
294 |
Q |
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| T |
22029679 |
taccgcagcattgttaatagccaatatagcttcctgagaaacacgcaaatcgctaatttcaccctttaacatcgtcctaattcgattcataggaaacaca |
22029580 |
T |
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| Q |
295 |
tgcg |
298 |
Q |
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|||| |
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| T |
22029579 |
tgcg |
22029576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 22029847 - 22029753
Alignment:
| Q |
19 |
gacattacatagatgattgtagctcaaggactttttccgatcctgagcacaacaaccataagcatcttccgttaattgttcaagaaacttctcct |
113 |
Q |
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| T |
22029847 |
gacattacatagatgattgtagctcaaagatttcttccgatcctgagcacaacaaccataagcatcttccgctaattgttcaagaaacttctcct |
22029753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 520 - 588
Target Start/End: Complemental strand, 22029363 - 22029295
Alignment:
| Q |
520 |
gctactgaattgttggaagaagccattgtgattgtactttgataagtgattattcagtacaagcacttt |
588 |
Q |
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| T |
22029363 |
gctactgaattgttggaagaagccattgtgattttactttgataagtgattattcagtacaagcacttt |
22029295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 22029505 - 22029469
Alignment:
| Q |
369 |
ggaatttccatttgtgaaattgagcttcttcttattc |
405 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22029505 |
ggaatttccatttgtgaaattgagcttcttcttattc |
22029469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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