View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15732_low_4 (Length: 425)

Name: NF15732_low_4
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15732_low_4
NF15732_low_4
[»] chr1 (15 HSPs)
chr1 (1-199)||(573972-574171)
chr1 (225-374)||(33659860-33660013)
chr1 (223-374)||(28283758-28283913)
chr1 (225-314)||(26244444-26244533)
chr1 (229-347)||(37335008-37335126)
chr1 (225-323)||(50616003-50616102)
chr1 (225-323)||(50623831-50623930)
chr1 (226-286)||(4426247-4426307)
chr1 (225-301)||(10891688-10891764)
chr1 (262-357)||(50615097-50615190)
chr1 (262-357)||(50622925-50623018)
chr1 (253-327)||(28284552-28284627)
chr1 (225-283)||(47213884-47213942)
chr1 (86-124)||(47683501-47683539)
chr1 (227-283)||(45813229-45813284)
[»] chr6 (5 HSPs)
chr6 (2-224)||(2471646-2471867)
chr6 (225-345)||(6608385-6608505)
chr6 (228-286)||(6606653-6606711)
chr6 (225-286)||(6607605-6607666)
chr6 (225-283)||(29429500-29429558)
[»] chr5 (10 HSPs)
chr5 (2-224)||(8981039-8981260)
chr5 (228-374)||(38943090-38943240)
chr5 (225-357)||(19033580-19033712)
chr5 (262-357)||(37922737-37922832)
chr5 (224-345)||(19033103-19033225)
chr5 (225-345)||(37923425-37923546)
chr5 (230-345)||(2332263-2332379)
chr5 (225-345)||(38943594-38943719)
chr5 (225-286)||(2331443-2331504)
chr5 (225-283)||(10361047-10361105)
[»] chr4 (14 HSPs)
chr4 (2-224)||(27134844-27135066)
chr4 (225-357)||(29893837-29893969)
chr4 (225-374)||(33394914-33395067)
chr4 (225-374)||(50646530-50646683)
chr4 (225-357)||(48542310-48542442)
chr4 (225-345)||(33394459-33394580)
chr4 (227-357)||(44087987-44088117)
chr4 (230-345)||(40260572-40260688)
chr4 (225-345)||(29893343-29893464)
chr4 (225-345)||(50646058-50646177)
chr4 (225-327)||(48541396-48541499)
chr4 (51-141)||(11322347-11322437)
chr4 (274-328)||(43323536-43323590)
chr4 (227-286)||(43326037-43326096)
[»] chr3 (18 HSPs)
chr3 (240-374)||(13648427-13648561)
chr3 (225-357)||(10030479-10030611)
chr3 (225-374)||(51800951-51801105)
chr3 (225-374)||(27042985-27043137)
chr3 (225-374)||(46416033-46416186)
chr3 (225-345)||(10029994-10030115)
chr3 (225-345)||(10257717-10257838)
chr3 (250-374)||(38507781-38507909)
chr3 (225-345)||(10181347-10181468)
chr3 (225-345)||(10124915-10125036)
chr3 (225-345)||(51801429-51801550)
chr3 (224-285)||(13647689-13647750)
chr3 (232-345)||(33464155-33464269)
chr3 (224-326)||(38506981-38507084)
chr3 (227-286)||(27043912-27043971)
chr3 (228-286)||(33464956-33465014)
chr3 (229-283)||(34266839-34266893)
chr3 (227-283)||(46961671-46961727)
[»] chr8 (5 HSPs)
chr8 (225-357)||(43139149-43139281)
chr8 (225-357)||(21570910-21571042)
chr8 (225-345)||(21570416-21570537)
chr8 (225-283)||(42840446-42840504)
chr8 (223-283)||(45376207-45376267)
[»] chr7 (6 HSPs)
chr7 (225-357)||(7475025-7475157)
chr7 (228-374)||(28870317-28870467)
chr7 (224-374)||(47514338-47514484)
chr7 (225-345)||(28869836-28869961)
chr7 (225-345)||(47513543-47513664)
chr7 (225-286)||(44185801-44185862)
[»] chr2 (7 HSPs)
chr2 (224-374)||(38825873-38826027)
chr2 (231-357)||(40133670-40133796)
chr2 (224-345)||(1156131-1156253)
chr2 (225-299)||(1156930-1157004)
chr2 (225-299)||(2283628-2283702)
chr2 (262-345)||(2285557-2285641)
chr2 (225-286)||(40129171-40129232)
[»] scaffold0022 (1 HSPs)
scaffold0022 (225-357)||(60341-60473)
[»] scaffold0072 (2 HSPs)
scaffold0072 (225-345)||(16237-16357)
scaffold0072 (223-286)||(17041-17104)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 574171 - 573972
Alignment:
Q  1 ctcatctttcatgacagcagaatcgtaacaatttcatttatgctttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaat 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  574171 ctcatctttcatgacagcagaattgtaacaatttcatttatgcttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaat 574072  T
Q  101 atagtgagctaatgatggtggtttat-aagatgcctagtaacaccagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctc 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  574071 atagtgagctaatgatggtggtttataaagatgcctagtaacagtagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctc 573972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 225 - 374
Target Start/End: Complemental strand, 33660013 - 33659860
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||    
T  33660013 ggcgagttttagcatggggcaattgtgaaattgcccaatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaattt 33659914  T
Q  325 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 374  Q
    ||||||||| ||||||||||||||| |||    |||||||||||||||||||||    
T  33659913 ataaccctactcaattataatttgattcaaattaatttacttgtaaatacatta 33659860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 223 - 374
Target Start/End: Original strand, 28283758 - 28283913
Alignment:
Q  223 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaat 322  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| ||||    
T  28283758 agggcgagttttagcatggggcaattgtgaaattgtcccatcttagatcaattttattttatttgttgttacatgtacatcctgcattttatattccaat 28283857  T
Q  323 ttataaccctattcaattataatttgactca----aatttacttgtaaatacatta 374  Q
    ||||| | ||| ||||||||||||||| |||    |||||||||||||||||||||    
T  28283858 ttatagctctactcaattataatttgattcaaattaatttacttgtaaatacatta 28283913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 26244533 - 26244444
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttat 314  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  26244533 ggcgagttttagcatggggtaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttat 26244444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 37335126 - 37335008
Alignment:
Q  229 agttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataa 328  Q
    ||||| |||||||||||||| | ||||| | | ||||||||||||||||||||||||| ||  ||||| |||||| |||||||||||||  ||||||||     
T  37335126 agtttcagcatggggcaattctcaaattgctccatcttagatcaattttgttttatttgctactacatatacatcatgcattttatattctaatttatag 37335027  T
Q  329 ccctattcaattataattt 347  Q
    |||||||||||||||||||    
T  37335026 ccctattcaattataattt 37335008  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 50616102 - 50616003
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||  | |||  |||||| | |||| |||||||||||||||    
T  50616102 ggcgagttttagtatggggcaattgtcaaattgccccatcttagatcaattttgttttatttggtattagctgtacaccttgcatttttatatttcaatt 50616003  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 50623930 - 50623831
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||  | |||  |||||| | |||| |||||||||||||||    
T  50623930 ggcgagttttagtatggggcaattgtcaaattgccccatcttagatcaattttgttttatttggtattagctgtacaccttgcatttttatatttcaatt 50623831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 4426247 - 4426307
Alignment:
Q  226 gcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 286  Q
    |||||||||||||| |||||||||  ||||||| | |||||||||||||||||||||||||    
T  4426247 gcgagttttagcatagggcaattgacaaattactccatcttagatcaattttgttttattt 4426307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 10891764 - 10891688
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtaca 301  Q
    |||| |||||||||||||||||| |  ||||| ||| |||||||||||||||||| |||| || | |||| ||||||    
T  10891764 ggcgggttttagcatggggcaatggaaaaatttccccatcttagatcaattttgtcttatctattattacttgtaca 10891688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 50615097 - 50615190
Alignment:
Q  262 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 357  Q
    |||||| ||||| |||||||||||| ||  |||||||||| | | |||||||||||  |||||| |   ||| |||||||||||||||||||||||    
T  50615097 atcttatatcaactttgttttatttgctactacatgtacaccttacattttatattctaatttaga--gctactcaattataatttgactcaaatt 50615190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 50622925 - 50623018
Alignment:
Q  262 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 357  Q
    |||||| ||||| |||||||||||| ||  |||||||||| | | |||||||||||  |||||| |   ||| |||||||||||||||||||||||    
T  50622925 atcttatatcaactttgttttatttgctactacatgtacaccttacattttatattctaatttaga--gctactcaattataatttgactcaaatt 50623018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 28284627 - 28284552
Alignment:
Q  253 aattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttata 327  Q
    |||| ||| ||||||||||||||||||||||||| || |||  ||| || | |||| |||||||||||||||||||    
T  28284627 aattgccccatcttagatcaattttgttttatttgctattagctgtccaccttgcatttttatatttcaatttata 28284552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 47213884 - 47213942
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 283  Q
    ||||||||||||||||||  |||||| ||||| | | |||||| |||||||||||||||    
T  47213884 ggcgagttttagcatgggtaaattgtcaaatttctccatcttatatcaattttgtttta 47213942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 47683501 - 47683539
Alignment:
Q  86 tcacatgcttgcaatatagtgagctaatgatggtggttt 124  Q
    |||||||||||| || |||||||||||||||||||||||    
T  47683501 tcacatgcttgcgatgtagtgagctaatgatggtggttt 47683539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 45813284 - 45813229
Alignment:
Q  227 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 283  Q
    ||||||||||||||||  |||||| |||||  || ||||||||||||||||||||||    
T  45813284 cgagttttagcatgggtaaattgtcaaattttcc-atcttagatcaattttgtttta 45813229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 2471867 - 2471646
Alignment:
Q  2 tcatctttcatgacagcagaatcgtaacaatttcatttatgctttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaata 101  Q
    ||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2471867 tcatctttcatga-agcagaattgtaacaatttcatttatgcttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaata 2471769  T
Q  102 tagtgagctaatgatggtggtttataagatgcctagtaacaccagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctcnn 201  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||      
T  2471768 tagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaaagagacagaagcggtggccttgtcttttttgaggcataggtggtctctt 2471669  T
Q  202 nnnnngcctgttctgtttatgag 224  Q
         ||||||||||||||||||    
T  2471668 tttttgcctgttctgtttatgag 2471646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 345
Target Start/End: Complemental strand, 6608505 - 6608385
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||| ||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| || |||  |||||||||| ||||||||||| ||||||    
T  6608505 ggcgggttttagcatgggacaattgttaaattgccccatcttagatcaattttgttttatttgctattagttgtacatcctacattttatattccaattt 6608406  T
Q  325 ataaccctattcaattataat 345  Q
    ||| | ||||| |||||||||    
T  6608405 atagctctatttaattataat 6608385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 6606653 - 6606711
Alignment:
Q  228 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 286  Q
    ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  6606653 gagttttagcatggggcaattgtgaaattgccccaacttagatcaattttgttttattt 6606711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 6607605 - 6607666
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 286  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  6607605 ggcgagttttagcatggggcaattgtgaaattgccccaacttagatcaattttattttattt 6607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 29429558 - 29429500
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 283  Q
    |||||||||||||||| |  |||||| ||||| ||| ||||||||||||||||||||||    
T  29429558 ggcgagttttagcatgagcaaattgtcaaatttccccatcttagatcaattttgtttta 29429500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 8981039 - 8981260
Alignment:
Q  2 tcatctttcatgacagcagaatcgtaacaatttcatttatgctttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaata 101  Q
    ||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8981039 tcatctttcatga-agcagaattgtaacaatttcatttatgcttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaata 8981137  T
Q  102 tagtgagctaatgatggtggtttataagatgcctagtaacaccagtagcaaagagacagaagcggtggccttatcttttttgaggcacaggtggtctcnn 201  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||      
T  8981138 tagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaaagagacagaagcggtggccttgtcttttttgaggcataggtggtctctt 8981237  T
Q  202 nnnnngcctgttctgtttatgag 224  Q
         ||||||||||||||||||    
T  8981238 tttttgcctgttctgtttatgag 8981260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 228 - 374
Target Start/End: Original strand, 38943090 - 38943240
Alignment:
Q  228 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttata 327  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  38943090 gagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaatttata 38943189  T
Q  328 accctattcaattataatttgactca----aatttacttgtaaatacatta 374  Q
       ||| |||||||||||||||||||    |||||||||||||||||||||    
T  38943190 gttctactcaattataatttgactcaaattaatttacttgtaaatacatta 38943240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 19033712 - 19033580
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||    
T  19033712 ggcgagttttagcatggagcaattgtgaaattgtcccatcttagatcaattttattttatttgctgttacatgtacaccctacattttatatttcaattt 19033613  T
Q  325 ataaccctattcaattataatttgactcaaatt 357  Q
    |||| |||| |||||||||||||||||||||||    
T  19033612 ataatcctactcaattataatttgactcaaatt 19033580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 37922737 - 37922832
Alignment:
Q  262 atcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttgactcaaatt 357  Q
    ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||  |||| |||||||||||||||||||||||    
T  37922737 atcttagatcaattttgttttatttgctgttatatgtacaccctgcattttatatttcaatttatagtcctactcaattataatttgactcaaatt 37922832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 224 - 345
Target Start/End: Original strand, 19033103 - 19033225
Alignment:
Q  224 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaat 322  Q
    ||||||||||||||| ||||||||||| ||| | ||| ||||||||||||||||||||||||| || |||  ||||||||||| | |||||||||| |||    
T  19033103 gggcgagttttagcaaggggcaattgtcaaactgccccatcttagatcaattttgttttatttgctattagttgtacatcctgtatttttatattttaat 19033202  T
Q  323 ttataaccctattcaattataat 345  Q
    |||||  | |||||| |||||||    
T  19033203 ttatagtcatattcatttataat 19033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 345
Target Start/End: Complemental strand, 37923546 - 37923425
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||| || ||| || ||||||||| |||||    
T  37923546 ggcgagttttagcatggggcaattgtcaaatttccccatcttagatcaattttgttttatttgctattagttgtccaccctacatttttatattccaatt 37923447  T
Q  324 tataaccctattcaattataat 345  Q
    |||| || |||| | |||||||    
T  37923446 tatagccatatttacttataat 37923425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 345
Target Start/End: Complemental strand, 2332379 - 2332263
Alignment:
Q  230 gttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgc-attttatatttcaatttataa 328  Q
    ||||||||||||||||||||| ||||| | | |||||| |||||||||||||||||| || |||  |||||||||| | |||||||||| |||||||||     
T  2332379 gttttagcatggggcaattgttaaattgctccatcttaaatcaattttgttttatttgctattagttgtacatcctacaattttatattccaatttatag 2332280  T
Q  329 ccctattcaattataat 345  Q
    | ||||| |||||||||    
T  2332279 ctctatttaattataat 2332263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 225 - 345
Target Start/End: Complemental strand, 38943719 - 38943594
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttact----gttacatgtacatcctgca-ttttatatttc 319  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||     |||  |||||||| |||| ||||||||| |    
T  38943719 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattaattaattgtacatcttgcatttttatattcc 38943620  T
Q  320 aatttataaccctattcaattataat 345  Q
    |||||||| || |||||| |||||||    
T  38943619 aatttatagccatattcatttataat 38943594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 2331443 - 2331504
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 286  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||    
T  2331443 ggcgagttttagcatggggcaattgtgaaattgccccaacttagatcaattttattttattt 2331504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 10361105 - 10361047
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 283  Q
    ||||||||||||||||||  |||||| |||||  || ||||||||||||||||||||||    
T  10361105 ggcgagttttagcatgggcaaattgtcaaattttcccatcttagatcaattttgtttta 10361047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 27135066 - 27134844
Alignment:
Q  2 tcatctttcatgacagcagaatcgtaacaatttcatttatgctttagaagctacatccaactggattaaactaacaatatatggtcacatgcttgcaata 101  Q
    ||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27135066 tcatctttcatga-agcagaattgtaacaatttcatttatgcttttgaagctacatccaactggattaaactaacaatatatgatcacatgcttgcaata 27134968  T
Q  102 tagtgagctaatgatggtggtttataagatgcctagtaacaccagtagcaaagagacagaagcggtggccttatc-ttttttgaggcacaggtggtctcn 200  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||     
T  27134967 tagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaaagagacagaagcggtggccttgtctttttttgaggcataggtggtctct 27134868  T
Q  201 nnnnnngcctgttctgtttatgag 224  Q
          ||||||||||||||||||    
T  27134867 ttttttgcctgttctgtttatgag 27134844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 29893969 - 29893837
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||    
T  29893969 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttattttatttgctgttacatttacatcctgcattttatatttcaattt 29893870  T
Q  325 ataaccctattcaattataatttgactcaaatt 357  Q
    ||| || ||||||||||||||||||||||||||    
T  29893869 atagccttattcaattataatttgactcaaatt 29893837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 225 - 374
Target Start/End: Complemental strand, 33395067 - 33394914
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||||    
T  33395067 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattctaattt 33394968  T
Q  325 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 374  Q
    ||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
T  33394967 atagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 33394914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 225 - 374
Target Start/End: Complemental strand, 50646683 - 50646530
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||| |||||||||||||| |||| ||||||||||  |||||    
T  50646683 ggcgagttttagcatggggcaattgtgaaattgctccatcttaaatcaattttgttttatttgctgttacatgtacaccctgtattttatattctaattt 50646584  T
Q  325 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 374  Q
    |||  |||| |||||||||||||||||||    |||||||||||||||||||||    
T  50646583 atagtcctactcaattataatttgactcaaattaatttacttgtaaatacatta 50646530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 48542442 - 48542310
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||||||||||||||||||||||||||||| | | | |||||||||||||||| |||||||| || ||| ||||||| ||||||||||||||| ||||||    
T  48542442 ggcgagttttagcatggggcaattgtgaaactgctccatcttagatcaattttattttatttgctattatatgtacaccctgcattttatattccaattt 48542343  T
Q  325 ataaccctattcaattataatttgactcaaatt 357  Q
    ||| ||||| ||||||||||||||| |||||||    
T  48542342 atagccctactcaattataatttgattcaaatt 48542310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 33394459 - 33394580
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||||||||||||| ||||||||| |||||    
T  33394459 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttgtacatcctgcatttttatattccaatt 33394558  T
Q  324 tataaccctattcaattataat 345  Q
    |||| || |||||| |||||||    
T  33394559 tatagccatattcatttataat 33394580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 227 - 357
Target Start/End: Complemental strand, 44088117 - 44087987
Alignment:
Q  227 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttat 326  Q
    ||||||||| |||||||||||||| ||||| |   |||||||| ||||||||||||||||  |  |||||||||| |||||||||||||||  |||||||    
T  44088117 cgagttttaacatggggcaattgtcaaattgcttcatcttagaacaattttgttttatttgttactacatgtacaccctgcattttatattctaatttat 44088018  T
Q  327 aaccctattcaattataatttgactcaaatt 357  Q
    | ||||| |||||||||||||||||||||||    
T  44088017 agccctactcaattataatttgactcaaatt 44087987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 230 - 345
Target Start/End: Original strand, 40260572 - 40260688
Alignment:
Q  230 gttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttataa 328  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||  ||| || ||| || ||||||||| |||||||||     
T  40260572 gttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttactattagttgtccaccctacatttttatattccaatttatag 40260671  T
Q  329 ccctattcaattataat 345  Q
    || |||| | |||||||    
T  40260672 ccatatttatttataat 40260688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 29893343 - 29893464
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||||| ||||| ||||||| ||||| | | |||||||||||||||||||||||||  | |||  ||||||||||||| ||||||||| |||||    
T  29893343 ggcgagttttagtatgggacaattgtcaaattgctccatcttagatcaattttgttttatttgttattaattgtacatcctgcatttttatattccaatt 29893442  T
Q  324 tataaccctattcaattataat 345  Q
    |||| || |||||| |||||||    
T  29893443 tatagccatattcatttataat 29893464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 50646058 - 50646177
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    ||||||||||||||||| |||||||| ||||| ||| |||||| |||||  |||||||||||||| |||  ||||||||||| | |||||||||||||||    
T  50646058 ggcgagttttagcatggagcaattgtcaaattgccccatcttaaatcaa--ttgttttatttactattaattgtacatcctgtatttttatatttcaatt 50646155  T
Q  324 tataaccctattcaattataat 345  Q
    ||||  | |||||| |||||||    
T  50646156 tatagtcatattcatttataat 50646177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 48541396 - 48541499
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    ||||||||||||||||||  |||||| ||||| | | || ||||||||||||||||||||||| | |||  ||| || | |||| |||||||||| ||||    
T  48541396 ggcgagttttagcatgggttaattgtcaaattgctccatattagatcaattttgttttatttattattagttgtccaccttgcatttttatattttaatt 48541495  T
Q  324 tata 327  Q
    ||||    
T  48541496 tata 48541499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 11322437 - 11322347
Alignment:
Q  51 gctacatccaactggattaaactaacaatatatggtcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaac 141  Q
    |||| ||| |||| ||||||||||| |||||||| | | ||||||||||| ||||  |||| ||| ||||||||||||| || ||||||||    
T  11322437 gctatatctaactagattaaactaataatatatgatgatatgcttgcaatgtagtatgctagtgacggtggtttataaggtgactagtaac 11322347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 43323536 - 43323590
Alignment:
Q  274 ttttgttttatttactgttacatgtacatcctgcattttatatttcaatttataa 328  Q
    ||||||||||||| || |||||| |||| |||||||||||||||||||| |||||    
T  43323536 ttttgttttatttgctattacatttacaccctgcattttatatttcaatctataa 43323590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 43326096 - 43326037
Alignment:
Q  227 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 286  Q
    |||||||||||||||| ||||||| ||| |  || |||||| ||||||||||||||||||    
T  43326096 cgagttttagcatgggacaattgtcaaactgtcccatcttaaatcaattttgttttattt 43326037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 13648561 - 13648427
Alignment:
Q  240 ggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaat 339  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || || | |||    
T  13648561 ggggcaattgtgaaattgccccatcttagatcaattttgttttatttcctgttacatgtacaccctgcattttatatttcaatttatagccgtacttaat 13648462  T
Q  340 tataatttgactcaaatttacttgtaaatacatta 374  Q
    |||||||||||||||||||||||||| ||||||||    
T  13648461 tataatttgactcaaatttacttgtatatacatta 13648427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 10030611 - 10030479
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||||    
T  10030611 ggcgagttttagcatgggacaattgtgaaattgccccatcttagatcaattttgttttatttgatgttacatgtacaccctgcattttatattctaattt 10030512  T
Q  325 ataaccctattcaattataatttgactcaaatt 357  Q
    ||| ||||| |||||||||||||||||||||||    
T  10030511 atagccctactcaattataatttgactcaaatt 10030479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 225 - 374
Target Start/End: Original strand, 51800951 - 51801105
Alignment:
Q  225 ggcgagttttagcatggggcaa-ttgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 323  Q
    |||||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  51800951 ggcgagttttagcatgaggcaaattgtgaaattgccccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatatttcaatt 51801050  T
Q  324 tataaccctattcaattataatttgactcaaatt----tacttgtaaatacatta 374  Q
    |||| || |||| |||||||||||||||||||||    ||||||| |||||||||    
T  51801051 tatagccttatttaattataatttgactcaaattaatttacttgttaatacatta 51801105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 225 - 374
Target Start/End: Original strand, 27042985 - 27043137
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||| |||||||||||||||||||||||||||| | ||||||    
T  27042985 ggcgagttttagcatggggcaattgtgaaattgctccatcttaaatcaattttgttttatttgctgttacatgtacatcctgcattttatactccaattt 27043084  T
Q  325 ataaccctattcaattataatttgactcaaatt----tacttgtaaatacatta 374  Q
    ||| ||||| |||||| ||||||||||||||||    ||||| |||||||||||    
T  27043085 atagccctactcaatt-taatttgactcaaattaatttacttataaatacatta 27043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 225 - 374
Target Start/End: Original strand, 46416033 - 46416186
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    ||||||||||||||||||||||||    |||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  46416033 ggcgagttttagcatggggcaatttcacaattgccccatcttaaatcaattttgttttatttgctgttacatgtacatcctgcattttatattccaattt 46416132  T
Q  325 ataaccctattcaattataatttgactca----aatttacttgtaaatacatta 374  Q
    ||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
T  46416133 atagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 46416186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 10029994 - 10030115
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || |||  ||||||||||| | ||||||||| |||||    
T  10029994 ggcgagttttagcatggggcaattgtcaaattgctctatcttagatcaattttgttttatttgctattagttgtacatcctgaatttttatattccaatt 10030093  T
Q  324 tataaccctattcaattataat 345  Q
    || |||| ||||||||||||||    
T  10030094 tacaaccatattcaattataat 10030115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 10257717 - 10257838
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| || |||  ||||||||||| | ||||||||| |||||    
T  10257717 ggcgagttttagcatgaggcaattgtcaaattgctctatcttagatcaattttgttttatttgctattagttgtacatcctgaatttttatattccaatt 10257816  T
Q  324 tataaccctattcaattataat 345  Q
    ||||||| ||||||||||||||    
T  10257817 tataaccatattcaattataat 10257838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 38507909 - 38507781
Alignment:
Q  250 tgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataaccctattcaattataatttga 349  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||| |||| | | ||||||||||| |||||||||  |||| |||||||||||||||    
T  38507909 tgaaattgccccatcttagatcaattttgttttatttgctgttacatttacaccttacattttatattccaatttatagtcctactcaattataatttga 38507810  T
Q  350 ctca----aatttacttgtaaatacatta 374  Q
    ||||    |||||||||||||||||||||    
T  38507809 ctcaaattaatttacttgtaaatacatta 38507781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 10181347 - 10181468
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    ||||||||||||||||||||| |||| ||||| | | |||||||||||||||||||||||||||| |||  ||||||||||| | ||||||||| |||||    
T  10181347 ggcgagttttagcatggggcagttgtcaaattgctccatcttagatcaattttgttttatttactattagttgtacatcctgaatttttatattccaatt 10181446  T
Q  324 tataaccctattcaattataat 345  Q
    ||||||  |||||| |||||||    
T  10181447 tataacaatattcatttataat 10181468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 10124915 - 10125036
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||| |||| |||||||||| |||||  ||||| ||||||||||||| |||||||| || |||  ||||||||||| | ||||||||| |||||    
T  10124915 ggcgagttttggcattgggcaattgtcaaattgtcctattttagatcaattttattttatttgctattagttgtacatcctgaatttttatattccaatt 10125014  T
Q  324 tataaccctattcaattataat 345  Q
    ||||||| ||||||||||||||    
T  10125015 tataaccatattcaattataat 10125036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 345
Target Start/End: Complemental strand, 51801550 - 51801429
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||  | |||  ||||||| ||||| ||||| ||| |||||    
T  51801550 ggcgagttttagcatgggacaattgtcaaattactcaatcttagatcaattttgttttatttgttattaattgtacattctgcatttttacattccaatt 51801451  T
Q  324 tataaccctattcaattataat 345  Q
    |||| || |||||| |||||||    
T  51801450 tatagccatattcatttataat 51801429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 13647689 - 13647750
Alignment:
Q  224 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatt 285  Q
    |||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  13647689 gggcgagttttaacatggggcaattgtcaaattgccccatcttagatcaattttgttttatt 13647750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 33464155 - 33464269
Alignment:
Q  232 tttagcatgggg-caattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataacc 330  Q
    |||||||||||| |||| || ||||| ||| |||||| |||||||||||||||||| || |||  |||||||||| |||||||||||  |||||||| |     
T  33464155 tttagcatgggggcaatcgttaaattgccccatcttaaatcaattttgttttatttgctattagttgtacatcctacattttatattctaatttatacct 33464254  T
Q  331 ctattcaattataat 345  Q
     |||| |||||||||    
T  33464255 ttatttaattataat 33464269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 38506981 - 38507084
Alignment:
Q  224 gggcgagttttagcatggggcaattgtga-aattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaa 321  Q
    ||||||||||||||||||||||||| ||| |||| ||| |||| |||||||||||||||||||| || |||  ||| || |||||| ||||||||| |||    
T  38506981 gggcgagttttagcatggggcaatt-tgacaattgccccatctaagatcaattttgttttatttgctattagttgtccaccctgcatttttatattccaa 38507079  T
Q  322 tttat 326  Q
    |||||    
T  38507080 tttat 38507084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 27043971 - 27043912
Alignment:
Q  227 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 286  Q
    |||| ||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  27043971 cgagatttagtatggggtaattgtcaaattgccctatcttagatcaattttgttttattt 27043912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 33465014 - 33464956
Alignment:
Q  228 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 286  Q
    ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||||||    
T  33465014 gagttttagcatggggcaattgtcaaattgccccaacttagatcaattttattttattt 33464956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 34266839 - 34266893
Alignment:
Q  229 agttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 283  Q
    ||||||||||||||  |||||| ||||| ||| ||||||||||||||||||||||    
T  34266839 agttttagcatgggcaaattgtcaaatttccccatcttagatcaattttgtttta 34266893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 46961727 - 46961671
Alignment:
Q  227 cgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 283  Q
    ||||||||||||||||  |||||| |||||  || |||||||||||||||| |||||    
T  46961727 cgagttttagcatgggtgaattgtcaaattttcccatcttagatcaattttatttta 46961671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 225 - 357
Target Start/End: Original strand, 43139149 - 43139281
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||    
T  43139149 ggcgagttttagcatggggcaattgtgaaattgccccatcttagatcaattttgttttatttgctgttagatgtacaccctgcattttatattccaattt 43139248  T
Q  325 ataaccctattcaattataatttgactcaaatt 357  Q
    ||| || || ||||||||||||||| |||||||    
T  43139249 atagccatactcaattataatttgattcaaatt 43139281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 21571042 - 21570910
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||  ||||| ||||||| |||| ||||||||||| |||||    
T  21571042 ggcgagttttagcatggggcatttgtgaaattgccctattttagatcaattttgttttatttgttgttatatgtacaccctgtattttatattttaattt 21570943  T
Q  325 ataaccctattcaattataatttgactcaaatt 357  Q
    |||  |||| |||||||||||||||||||||||    
T  21570942 atagtcctactcaattataatttgactcaaatt 21570910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 21570416 - 21570537
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||||||||||||| ||||||||| |||||    
T  21570416 ggcgagttttagtatggggcaattgtcaaattgcccaatcttagatcaattttgttttatttgctattagttgtacatcctgcatttttatattccaatt 21570515  T
Q  324 tataaccctattcaattataat 345  Q
    ||||||| |||| | |||||||    
T  21570516 tataaccatatttatttataat 21570537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 42840446 - 42840504
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 283  Q
    ||||||||||||||||||  |||||| ||||| | | ||||||||||||||||||||||    
T  42840446 ggcgagttttagcatgggcaaattgtcaaatttctccatcttagatcaattttgtttta 42840504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 45376267 - 45376207
Alignment:
Q  223 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgtttta 283  Q
    |||||||||||||| |||||  |||| | ||||| ||| ||||||||||||||||||||||    
T  45376267 agggcgagttttagtatgggcaaattatcaaatttccccatcttagatcaattttgtttta 45376207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 225 - 357
Target Start/End: Original strand, 7475025 - 7475157
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||| |||| | || ||||||||||  |||||    
T  7475025 ggcgagttttagcatggggcaattatgaaattaccccatcttagattaattttgttttatttgctgttacatatacaccatgtattttatattctaattt 7475124  T
Q  325 ataaccctattcaattataatttgactcaaatt 357  Q
    ||||||||||| |||||||||||||||||||||    
T  7475125 ataaccctatttaattataatttgactcaaatt 7475157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 228 - 374
Target Start/End: Complemental strand, 28870467 - 28870317
Alignment:
Q  228 gagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttata 327  Q
    |||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  28870467 gagttttagcatggggtaattgtgaaattgctccatcttagatcaattttgttttatttgttgttacatgtacaccctgcattttatattccaatttata 28870368  T
Q  328 accctattcaattataatttgactca----aatttacttgtaaatacatta 374  Q
       ||| |||||||||||||||||||    |||||||||||||||||||||    
T  28870367 gttctactcaattataatttgactcaaattaatttacttgtaaatacatta 28870317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 224 - 374
Target Start/End: Complemental strand, 47514484 - 47514338
Alignment:
Q  224 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 323  Q
    ||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||    
T  47514484 gggcgagttttagcatggggcaattg--------ccccatcttagatcaattttgttttatttgctgttacatgtacaccctgcattttatattctaatt 47514393  T
Q  324 tataaccctattcaattataatttgactca----aatttacttgtaaatacatta 374  Q
    ||||  | || |||||| ||||||||||||    |||||||||||||||||||||    
T  47514392 tatagtcatactcaattgtaatttgactcaaattaatttacttgtaaatacatta 47514338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 28869836 - 28869961
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttact----gttacatgtacatcctgca-ttttatatttc 319  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||    ||||  |||||||| |||| ||||||||| |    
T  28869836 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttaattgtacatcttgcatttttatattcc 28869935  T
Q  320 aatttataaccctattcaattataat 345  Q
    |||||||| || |||||| |||||||    
T  28869936 aatttatagccatattcatttataat 28869961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 47513543 - 47513664
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatt 323  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||  ||| || ||| || ||||| |||||||||    
T  47513543 ggcgagttttagcatggggcaattgtcaaattgccccatcttagatcaattttgttttatttgctattagttgtccaccctacatttttacatttcaatt 47513642  T
Q  324 tataaccctattcaattataat 345  Q
    |||| || |||| | |||||||    
T  47513643 tatagccatatttatttataat 47513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 44185862 - 44185801
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 286  Q
    |||||||||||||||||||||||||| |||||  || |||||||||||||||| ||||||||    
T  44185862 ggcgagttttagcatggggcaattgtcaaattgtcccatcttagatcaattttattttattt 44185801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 224 - 374
Target Start/End: Complemental strand, 38826027 - 38825873
Alignment:
Q  224 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatt 323  Q
    ||||||||||| ||||||||| ||||||||||| |   ||||||||| |||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  38826027 gggcgagtttttgcatggggcgattgtgaaattgcttcatcttagataaattttgttttatttgatgttacatgtacaccctgcattttatatttcaatt 38825928  T
Q  324 tataaccctattcaattataatttgactca----aatttacttgtaaatacatta 374  Q
    |||| | ||| |||||||||||||||||||    |||||||||||||||||||||    
T  38825927 tatagctctactcaattataatttgactcaaattaatttacttgtaaatacatta 38825873  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 231 - 357
Target Start/End: Complemental strand, 40133796 - 40133670
Alignment:
Q  231 ttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaatttataacc 330  Q
    |||||||| |||||| |||||||||| ||| |||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||| ||    
T  40133796 ttttagcacggggcagttgtgaaattgccccatcttaaatcaattttgttttatttgctgttagatgtacaccctgcattttatattccaatttatagcc 40133697  T
Q  331 ctattcaattataatttgactcaaatt 357  Q
    ||| ||||||||||||||| |||||||    
T  40133696 ctactcaattataatttgattcaaatt 40133670  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 345
Target Start/End: Original strand, 1156131 - 1156253
Alignment:
Q  224 gggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcct-gcattttatatttcaat 322  Q
    ||||| ||||||||||||||||||||| |||||   | |||||| |||||||||||||||||| || |||  ||||||| ||   |||||||||||||||    
T  1156131 gggcgggttttagcatggggcaattgttaaattgttccatcttaaatcaattttgttttatttgctattaattgtacattctataattttatatttcaat 1156230  T
Q  323 ttataaccctattcaattataat 345  Q
    ||||| | ||||| |||||||||    
T  1156231 ttatagctctatttaattataat 1156253  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 1157004 - 1156930
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgta 299  Q
    |||||||||||||||||| |||||||||||||| || | ||||||||||||||||||||||| || |||| ||||    
T  1157004 ggcgagttttagcatgggacaattgtgaaattatcccaacttagatcaattttgttttatttgctattacttgta 1156930  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 2283628 - 2283702
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgta 299  Q
    ||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||| || |||| ||||    
T  2283628 ggcgagttttagcatggagcaattgtgaaattgccccaacttagatcaattttgttttatttgctattacttgta 2283702  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 345
Target Start/End: Complemental strand, 2285641 - 2285557
Alignment:
Q  262 atcttagatcaattttgttttatttactgttacatgtacatcctgca-ttttatatttcaatttataaccctattcaattataat 345  Q
    |||||| |||||||||||||||||| || |||  |||||||||| || ||||||||||||||||||| | ||||| |||||||||    
T  2285641 atcttaaatcaattttgttttatttgctattagttgtacatcctacaattttatatttcaatttatagctctatttaattataat 2285557  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 40129171 - 40129232
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 286  Q
    |||| |||||||||||||| |||||| ||||| | | |||||||||||||||| ||||||||    
T  40129171 ggcgtgttttagcatggggtaattgtcaaattgctccatcttagatcaattttcttttattt 40129232  T

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Target: scaffold0022 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 60473 - 60341
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||| || ||||||||||| | || ||||||||||  |||||    
T  60473 ggcgagttttagcatggggcaattgtcaaattgctccatcttagatcaattttgttttatttgctattacatgtacaccttgtattttatattctaattt 60374  T
Q  325 ataaccctattcaattataatttgactcaaatt 357  Q
    |||  |||| |||||||||||||||||||||||    
T  60373 atagtcctactcaattataatttgactcaaatt 60341  T

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Target: scaffold0072 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 16237 - 16357
Alignment:
Q  225 ggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttatttactgttacatgtacatcctgcattttatatttcaattt 324  Q
    |||| |||||||||| || ||||||| |||||   | ||||||||||||||||||||||||| ||  ||  |||||||||| ||||||||||||||||||    
T  16237 ggcgggttttagcataggacaattgttaaattggtccatcttagatcaattttgttttatttgctactagctgtacatcctacattttatatttcaattt 16336  T
Q  325 ataaccctattcaattataat 345  Q
    ||| | ||||| |||||||||    
T  16337 atagctctatttaattataat 16357  T

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Target: scaffold0072; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 17104 - 17041
Alignment:
Q  223 agggcgagttttagcatggggcaattgtgaaattaccctatcttagatcaattttgttttattt 286  Q
    |||| ||||||||||||||| ||||||||||||| ||  | |||||||||||||||||||||||    
T  17104 agggtgagttttagcatgggacaattgtgaaattgcctcaacttagatcaattttgttttattt 17041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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