View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15732_low_5 (Length: 358)
Name: NF15732_low_5
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15732_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 38089430 - 38089732
Alignment:
| Q |
15 |
aatactacaaacatataggagaaaatagcacaagcgaaactcaaagccaaaacatcgggctagttgaatcattggcctttatatatgatataaattcttc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089430 |
aatactacaaacatataggagaaaatagctcaagcgaaactcaaagccaaaacattgagctagttgaatcattggcctttatatatgatataaattcttc |
38089529 |
T |
|
| Q |
115 |
ttaatgtgtattgaacctcagaccacaacttacactttaattaatttattgaacttaatgatgtcaaagagttatttttcatatacattgcgnnnnnnnn |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089530 |
ttaatgtgtattgaacctgagaccacaacttacact----ttaatttattgaacttaatgatgtcaaagagttatttttcatatacattgcg-ctttttt |
38089624 |
T |
|
| Q |
215 |
nnatatacacggtgcatataaaagaaaaatactccacttcattaagttttgtaaactatagtttaaattttggtcatatgtttaataccaaggaagaaga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089625 |
ttatatacacggtgcatataaaagaaaaatactccacttcattaagttttgtaaactatagtttaaattttggtcatatgtttaataccaaggaagaaga |
38089724 |
T |
|
| Q |
315 |
atttgtat |
322 |
Q |
| |
|
|||||||| |
|
|
| T |
38089725 |
atttgtat |
38089732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 38089818 - 38089763
Alignment:
| Q |
15 |
aatactacaaacatataggagaaaatagcacaagcgaaactcaaagccaaaacatc |
70 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | ||||||| | |||||||| |
|
|
| T |
38089818 |
aatactacaaacatggaggagaaaatagcacaagcaagactcaaaactaaaacatc |
38089763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University