View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15732_low_8 (Length: 311)
Name: NF15732_low_8
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15732_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 9994803 - 9995083
Alignment:
| Q |
17 |
tacccagctgcagacatctgtaatgctattagatagggtatacaagataaagtcctccaccaccattccggcttctcagcatttgcagggattcgaaagc |
116 |
Q |
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| T |
9994803 |
tacccagctgcagacatctgcaatgctattagatagggtatacaagataaagtcctccaccaccattccggcttctcagcatttgcagggattcgaaagc |
9994902 |
T |
|
| Q |
117 |
cagaccaatgatatatgtatgcttgtgtacgagtagtagaactgcttcttcaagacattggaacattgagtgagaggtgaccatggctatcagtagatag |
216 |
Q |
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| T |
9994903 |
cagaccaatgatatatgtatgcttgtgtacgagtagtagaactgcttcttcaagacatgggaacattgagtgagaggtgaccatggctatcagtagatag |
9995002 |
T |
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| Q |
217 |
tggaaatgaaacagccgttaatgtaggtgaaacagccgtgagtcgtgaagctgattttcctaaaataaaatgtagatgttg |
297 |
Q |
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| T |
9995003 |
tggaaatgaaacagccgttagtgtaggtgaaacagccgtgagtcgtgaagctgattttcctaaaataaaatgtagatgttg |
9995083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 38117999 - 38117785
Alignment:
| Q |
17 |
tacccagctgcagacatctgtaatgctattagatagggtatacaagataaagtcctccaccaccattccggcttctcagcatttgcagggattcgaaagc |
116 |
Q |
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|||||||| ||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||||||| | |
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| T |
38117999 |
tacccagcggcagacatctgcattgctattagatagggtatacatgataaagttctccaccaccattctggcttctcagaatttgcagggattcgaaaac |
38117900 |
T |
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| Q |
117 |
cagaccaatgatatatgtatgcttgtgtacgagtagtagaactgcttcttcaagacattggaacattgagtgagaggtgaccatggctatcagtagatag |
216 |
Q |
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|||||||||| ||||| ||||||| || ||||||| ||||||||||||||| || |||||| || ||||||||||||||||||| |||||||| | | |
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| T |
38117899 |
cagaccaatggtatatatatgcttctggacgagtactagaactgcttcttcgggagattggagcaccgagtgagaggtgaccatggttatcagtaaacaa |
38117800 |
T |
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| Q |
217 |
tggaaatgaaacagc |
231 |
Q |
| |
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|||| |||||||||| |
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| T |
38117799 |
tggagatgaaacagc |
38117785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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