View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15732_low_9 (Length: 298)
Name: NF15732_low_9
Description: NF15732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15732_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 399031 - 399260
Alignment:
| Q |
19 |
acaattgccatgaaattattcttattactataaaaactcccaacgactcttttgaagtccgacacaaaatccacatgacccaactaaagatcatgcacat |
118 |
Q |
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| T |
399031 |
acaaatgccatgaaattattcttattactatgaaaactcccaacgactcttttggagtccgacacaaaatccacatgacccaactaaagatcatccccat |
399130 |
T |
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| Q |
119 |
gtaagaatcaaaactaaaccttaaaccttcgaatcaatcatgttaatcataataaata--atatatcaatatgaggaagcatacttgaattcattattat |
216 |
Q |
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| T |
399131 |
gtaagaaccaaaattaaaccttacaccttagaatcaatcatgttaatcataa-aaataatatatatcaatatgagaaagcatacttgaattcattatgat |
399229 |
T |
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| Q |
217 |
caagtaacattgtggtttgacattccaaatc |
247 |
Q |
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|||||| |||||||||||||||||||||||| |
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| T |
399230 |
caagtagcattgtggtttgacattccaaatc |
399260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 12900948 - 12901008
Alignment:
| Q |
150 |
aatcaatcatgttaatcataataaataatatatcaatatgaggaagcatacttgaattcat |
210 |
Q |
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| T |
12900948 |
aatcaatcatgttaatcataagaaataataaatcaatatgcgtaagcatatctgaattcat |
12901008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 12950021 - 12950081
Alignment:
| Q |
150 |
aatcaatcatgttaatcataataaataatatatcaatatgaggaagcatacttgaattcat |
210 |
Q |
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| T |
12950021 |
aatcaatcatgttaatcataagaaatagtaaatcaatatgcgtaagcatatctgaattcat |
12950081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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