View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15733_high_15 (Length: 236)

Name: NF15733_high_15
Description: NF15733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15733_high_15
NF15733_high_15
[»] chr5 (2 HSPs)
chr5 (3-220)||(18960329-18960548)
chr5 (2-65)||(12513065-12513128)
[»] chr4 (3 HSPs)
chr4 (3-65)||(10982272-10982334)
chr4 (1-65)||(3343687-3343751)
chr4 (2-65)||(3343865-3343931)
[»] chr1 (1 HSPs)
chr1 (2-65)||(3547028-3547091)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 18960548 - 18960329
Alignment:
Q  3 gcatgtattcctcttgacatttagcttattgtatgtattaattagtcatgacacttgatttatgnnnnnnnnnngacaaaatgacacttgatttattgtg 102  Q
    ||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||    
T  18960548 gcatgtattcctcttgacacttgacttgttgtatgtattaattagtcatgacacttgatttat-ttatttttttgacaaaatgacacttgatttattgtg 18960450  T
Q  103 agtgta---tttggcttgatgcatgtattaatgttagcccgtgctaacacttcacacttattttttaatttatttagttgaagagaagttcattcaattt 199  Q
    | ||||   |||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||||||    
T  18960449 aatgtaacatttgacttgctgcatgtattaatgttagcccgtgctaacacttgacacttgttttttaatttatttaatcgaagagaagttcattcaattt 18960350  T
Q  200 gaagtggaagcaattgcattc 220  Q
    ||| |||||||||||| ||||    
T  18960349 gaactggaagcaattgaattc 18960329  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 12513065 - 12513128
Alignment:
Q  2 tgcatgtattcctcttgacatttagcttattgtatgtattaattagtcatgacacttgatttat 65  Q
    |||||||||||||||||||| || | || ||| ||||||| || |||||||||||||| |||||    
T  12513065 tgcatgtattcctcttgacacttggattgttgcatgtattcatgagtcatgacacttggtttat 12513128  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 10982334 - 10982272
Alignment:
Q  3 gcatgtattcctcttgacatttagcttattgtatgtattaattagtcatgacacttgatttat 65  Q
    |||||||||||| ||||||||| |||| ||| ||||||| || |||||||||||||| |||||    
T  10982334 gcatgtattccttttgacatttggcttgttgcatgtattcatgagtcatgacacttggtttat 10982272  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3343687 - 3343751
Alignment:
Q  1 ttgcatgtattcctcttgacatttagcttattgtatgtattaattagtcatgacacttgatttat 65  Q
    ||||||||||||||||||| | || |||| ||| ||||||| ||||||||||||| ||| |||||    
T  3343687 ttgcatgtattcctcttgaaacttggcttgttgcatgtattcattagtcatgacatttggtttat 3343751  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 3343865 - 3343931
Alignment:
Q  2 tgcatgtattcctcttgacatttagcttattgtatgtat---taattagtcatgacacttgatttat 65  Q
    ||||||||||||||||||||||| |||| ||| ||||||   |||| |||||| ||||||| |||||    
T  3343865 tgcatgtattcctcttgacatttggcttgttgcatgtattcctaatgagtcatcacacttggtttat 3343931  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 3547028 - 3547091
Alignment:
Q  2 tgcatgtattcctcttgacatttagcttattgtatgtattaattagtcatgacacttgatttat 65  Q
    ||||||||||| |||||||| || |||| ||| |||||||  | ||||||||||||||||||||    
T  3547028 tgcatgtattcatcttgacacttggcttgttgcatgtattcgtgagtcatgacacttgatttat 3547091  T

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